PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g30720.1 | ||||||||
Common Name | OsJ_18290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 665aa MW: 76404.4 Da PI: 7.9325 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.8 | 2.8e-21 | 41 | 133 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA +vGFsvr+ ++kk +g + + f C +eg+ e++ ++ +ek++ ++ tr+gC+akl++k+ + +k+++t +e+ H+H+ LOC_Os05g30720.1 41 EFYESYALRVGFSVRIGQHKKV--DGVVLYKLFLCANEGFWEDKGERglesgSEKRSYEKRITRCGCEAKLVIKLVDGDKYVITGFEQGHTHA 131 6*****************9998..*******************9999999988888899*********************************9 PP FAR1 89 la 90 ++ LOC_Os05g30720.1 132 FV 133 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-18 | 41 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.6E-29 | 255 | 347 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MAGRLDFNDV HSDAESVTAD CDDSMVPNIG MTFNGLESAK EFYESYALRV GFSVRIGQHK 60 KVDGVVLYKL FLCANEGFWE DKGERGLESG SEKRSYEKRI TRCGCEAKLV IKLVDGDKYV 120 ITGFEQGHTH AFVSPDKRHL IRSNRKLTLS GRNTLLTCHK ASIGTSQAYR YLRVGVGGFE 180 NVGFTKRDLQ NYHSALRVLI KSSDALMFVD QLSRKSLANP GFYFDYVVDD KGRLIHVFWA 240 DAICRKNYAH FGDLVSFDST YSTNEYGMVF TPFTGVNHHK SSVLFGATML SDETMESYMW 300 LFHTFLKAMG GVAPKLIITD EAASMKAAIR EVLTTTIHRL CMWHILMKVC EKVGPILKED 360 EKFKARLSSC VWSSETPLEF EDEWSCIIYE YGLEDNEWFS TKFDQRRSWV PAYFSDIPLL 420 GLLRTTSRSE SADSFFSRLI GWKLALVEFW LRLDAALEEQ RHKELEEDNI TLHTIRNLKT 480 EWVIEKHAIL RSAQLSELPR YYLLERFRKD CKKTHVFDAD GILLEENTSN SNDPVMQKML 540 SEACNQMEKL ILQAKQSAAA MQLLRDELVV LGDKLNEMVP EKELSQIEEF ESYLGCSIPS 600 QIEIHPPNDT RSRGRIKRIK GHNDKEKKQN KKRKKKERVP RRCKKCKQVM LHDSHNCPNK 660 EPQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 630 | 634 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18399 | 0.0 | panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32975995 | 0.0 | ||||
Expression Atlas | B9FHJ0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g30720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g30720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104707 | 0.0 | AC104707.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_F06, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640678.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9FHJ0 | 0.0 | B9FHJ0_ORYSJ; Uncharacterized protein | ||||
STRING | TRIUR3_33462-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-93 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g30720.1 |