PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g30310.1
Common NameOSJNBa0090H02.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 897aa    MW: 101516 Da    PI: 7.9105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g30310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98.2e-24112206190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       kfY++YA+e+GFsvr+ ++kk+  n+ei  ++++Cs+eg+ +e+ k+       ++++    +etr+gC+a+++vk+ +d+k++++++  eH+
  LOC_Os05g30310.1 112 KFYKSYAHEAGFSVRVGQHKKQ--NEEILFKRYYCSREGYIKERVKDvsdesgkKKRKTPYMMETRCGCEAHIVVKLGSDKKYRISSMIGEHS 202
                       6*****************9998..999*******************99999865555555899****************************** PP

              FAR1  87 Hela 90 
                       H ++
  LOC_Os05g30310.1 203 HGFV 206
                       *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-23112206IPR004330FAR1 DNA binding domain
PfamPF105519.9E-32327420IPR018289MULE transposase domain
PROSITE profilePS5096610.385606644IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-6610637IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-7619646IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MESSPATPWT PAQGKDVLPH QSGFDDLMNS EINPIVAVDG EPVVAVDSAY VEATAMDHAV  60
ITVEAVDAGV VAHLEQPSTP QPTSSPSIAE SCKEHLKPMV GMIFDTLTDV EKFYKSYAHE  120
AGFSVRVGQH KKQNEEILFK RYYCSREGYI KERVKDVSDE SGKKKRKTPY MMETRCGCEA  180
HIVVKLGSDK KYRISSMIGE HSHGFVSPDK RHLLRSNRTV SERAKSTLFS CHKASIGTSQ  240
AFRLLQVSDG GFQNVGCTLR NLQNYYHDLR CKIKDADAQM FVGQLERKKE VNPAFFYEFM  300
VDKQGRLVRV FWADAICRKN YSVFGDVLSV DSTYSTNQYN MKFVPFTGVN HHLQSVFLGA  360
SFLADEKIES FVWLFQTFLK ATGGVAPRLI ITDEDASMKA AIAQILPNTV HRLCMWHIME  420
KVPEKVGPSI REDGEFWDRL HKCVWGSEDS DDFESEWNSI MAKYGLIGNE WFSTKFDIRQ  480
SWILAYFMDI PLAGILSTTS RSESANSFFN RFIHRKLTFV EFWLRFDTAL ECQRQEELKA  540
DNISLHTNPK LMTPWDMEKQ CSGIYTHEVF SKFQEQLIVA RDHCIIQGIS KSGDMKIVTI  600
SSLFEKERVV QMNKSNMFGT CSCKLYESYG IPCRHIIQVL RGEKQNEIPS IYIMKRWEKI  660
CKRFDQIFNF TEKCSLMTKN SEQGMEFLYS SLSDLVEPLQ KIIPAAIVNK QDEFESFLGS  720
KIPDEVEIHP PNIKSKGPCK RIKKSKEKKA PRKRKCGKCK QSLLFRHYSP RRGCLLFRHN  780
CHHSISDPVL TEVMAGLPLG ACCTCVTLPL TAHGVLVIVG SEAPSQFLPV MRSFQLSAAA  840
DDAPRCCPWL QPYPTELGSD ATIEDISLAA ASKATSDDHR MAGEAQRGAH EAARRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1748754KAPRKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154794300.0
Expression AtlasQ60DY0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g30310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g30310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1213660.0AC121366.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111K12, complete sequence.
GenBankAC1376180.0AC137618.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0090H02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881107.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ60DY00.0Q60DY0_ORYSJ; Uncharacterized protein
STRINGSb01g026910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-110FAR1-related sequence 5