PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g29810.1
Common NameLOC4338539, Os05g0361700, OSNPB_050361700, P0530H10.12, P0692D12.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 199aa    MW: 20772.2 Da    PI: 7.7097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g29810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-1954102355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +grW+AeIrdp++    +r++lg++ taeeAa+a++ a++ ++g
  LOC_Os05g29810.1  54 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDVAARDIRG 102
                       9*******.**********954...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-1453102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3153110IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2253111IPR016177DNA-binding domain
PROSITE profilePS5103224.89553110IPR001471AP2/ERF domain
SMARTSM003804.8E-3453116IPR001471AP2/ERF domain
CDDcd000182.42E-2854112No hitNo description
PRINTSPR003673.1E-115465IPR001471AP2/ERF domain
PRINTSPR003673.1E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MCGGAIIADF VPPAGARRAA ASDISDNAVL SAAGAGDESF AAAKAPAPGR KTAYRGIRRR  60
PWGRWAAEIR DPRKGARVWL GTYATAEEAA RAYDVAARDI RGAKAKLNFP PTIGAAAAPP  120
PPKKRRKAAA AANHHHHHHQ QESSGSSSAS SLPPTPPPAA EHQLRECMSG LEAFLGLEEE  180
EDDGGAGEPW DAVDMMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21541101572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.48930.0callus| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853930.0
Expression AtlasQ6L4M2-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g29810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g29810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001840.0AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638395.11e-139ethylene-responsive transcription factor ERF071
SwissprotP427362e-34RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0HDD21e-138A0A0E0HDD2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PLD41e-138A0A0E0PLD4_ORYRU; Uncharacterized protein
TrEMBLQ6L4M21e-138Q6L4M2_ORYSJ; Os05g0361700 protein
STRINGORUFI05G14490.11e-138(Oryza rufipogon)
STRINGOS05T0361700-011e-138(Oryza sativa)
STRINGONIVA05G14090.11e-138(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-20ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]