PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g28320.1
Common NameOs05g0350900, OSJNBa0077J17.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 304aa    MW: 31528.1 Da    PI: 7.1317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g28320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-192065147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEde+l  av+++G+++W++I+++++ gR++k+c++rw + 
  LOC_Os05g28320.1 20 KGSWSPEEDEQLRGAVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65
                      799*****************************.***********985 PP
2Myb_DNA-binding57.23.9e-1872115146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T++Ed l+v a++++G++ W+tIar +  gRt++++k++w++
  LOC_Os05g28320.1  72 RRPFTPDEDALIVAAHAKYGNK-WATIARLLD-GRTDNSVKNHWNS 115
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4861570IPR017930Myb domain
SuperFamilySSF466892.16E-3017113IPR009057Homeodomain-like
SMARTSM007172.3E-161968IPR001005SANT/Myb domain
PfamPF002492.4E-192065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-242173IPR009057Homeodomain-like
CDDcd001679.61E-162264No hitNo description
PROSITE profilePS5129421.64571121IPR017930Myb domain
SMARTSM007172.7E-1571119IPR001005SANT/Myb domain
PfamPF002495.3E-1572115IPR001005SANT/Myb domain
CDDcd001672.85E-1274117No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2274120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MLIHGEGSSS SAAAAGGKIK GSWSPEEDEQ LRGAVARHGP RNWTAISEEV PGRSGKSCRL  60
RWCNQLSPGV HRRPFTPDED ALIVAAHAKY GNKWATIARL LDGRTDNSVK NHWNSSLRRN  120
RRAAAAAAAA AASVSYQSMD LTEEADNDDE GTSDDSVAIP AQSSPAAVVA GVPVLPPPPP  180
PAKRLCVAPP TGVEHRAPPP DPPTSLSLSP PGAAAAAISA STVVGGSSAA RAEEEAVARE  240
KARMEQDPWL MAMMRQMITE EVQRQVSVVY SLVASSAAMA AQTGNAGGVG RKGPDGRPSN  300
GQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-34191193103MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-34191193103C-Myb DNA-Binding Domain
1msf_C7e-34191193103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.709160.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5W6G6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g28320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g28320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362210.0AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639574.20.0transcription factor MYB77
TrEMBLA0A0E0PL530.0A0A0E0PL53_ORYRU; Uncharacterized protein
TrEMBLQ5W6G60.0Q5W6G6_ORYSJ; Os05g0350900 protein
STRINGORUFI05G13850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-52myb domain protein r1