PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g27930.4
Common NameB1036C05.12, B1164G01.2, DREB2B, ERF42, LOC4338484, Os05g0346200, OsJ_18158
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 299aa    MW: 32158.4 Da    PI: 4.0206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g27930.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-191262155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++++GVr++  +g+WvAeIr+p   +++ r +lg+f tae Aa a+++a+++++g
  LOC_Os05g27930.4 12 CDFRGVRQRT-WGKWVAEIREP---NQQSRLWLGTFPTAEAAACAYDEAARAMYG 62
                      689****999.**********9...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-121262IPR001471AP2/ERF domain
CDDcd000182.26E-181269No hitNo description
SMARTSM003807.9E-351376IPR001471AP2/ERF domain
PROSITE profilePS5103221.2721370IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-201470IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-311470IPR001471AP2/ERF domain
PRINTSPR003671.5E-91425IPR001471AP2/ERF domain
PRINTSPR003671.5E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKGKGGPENT RCDFRGVRQR TWGKWVAEIR EPNQQSRLWL GTFPTAEAAA CAYDEAARAM  60
YGPMARTNFG QHHAPAASVQ VALAAVKCAL PGGGLTASKS RTSTQGASAD VQDVLTGGLS  120
ACESTTTTIN NQSDVVSTLH KPEEVSEISS PLRAPPAVLE DGSNEDKAES VTYDENIVSQ  180
QRAPPEAEAS NGRGEEVFEP LEPIASLPED QGDYCFDIDE MLRMMEADPT NEGLWKGDKD  240
GSDAILELGQ DEPFYYEGVD PGMLDNLLRS DEPAWLLADP AMFISGGFED DSQFFEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-131469662ATERF1
3gcc_A1e-131469662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.77180.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166324300.0
Expression AtlasQ5W6R4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Function -- GeneRIF ? help Back to Top
  1. OsCCD1 gene probably affects the DREB2B and its downstream genes to positively regulate osmotic and salt tolerance in rice seedlings.
    [PMID: 27095404]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g27930.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g27930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349270.0AC134927.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1036C05, complete sequence.
GenBankAC1349280.0AC134928.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1164G01, complete sequence.
GenBankAK0718500.0AK071850.1 Oryza sativa Japonica Group cDNA clone:J023116E13, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankGU0467900.0GU046790.1 Oryza sativa Japonica Group cultivar Dongjin-byeo putative DREB transcription factor 3 mRNA, complete cds.
GenBankJF9158420.0JF915842.1 Oryza sativa dehydration responsive element binding protein 2B (DREB2B) gene, complete cds, alternatively spliced.
GenBankJF9158430.0JF915843.1 Oryza sativa dehydration responsive element binding protein 2B isoform a (DREB2B) mRNA, complete cds, alternatively spliced.
GenBankJF9158440.0JF915844.1 Oryza sativa dehydration responsive element binding protein 2B isoform b (DREB2B) mRNA, complete cds, alternatively spliced.
GenBankJF9158450.0JF915845.1 Oryza sativa dehydration responsive element binding protein 2B isoform c (DREB2B) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639654.10.0dehydration-responsive element-binding protein 2B isoform X5
SwissprotQ5W6R40.0DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0E0PL220.0A0A0E0PL22_ORYRU; Uncharacterized protein
TrEMBLJ7FAK10.0J7FAK1_ORYSA; Dehydration responsive element binding protein 2B isoform b
TrEMBLJ7FB460.0J7FB46_ORYSA; Dehydration responsive element binding protein 2B isoform a
STRINGORUFI05G13560.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.28e-25DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]
  4. Jing P, et al.
    OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.
    Plant Sci., 2016. 247: p. 104-14
    [PMID:27095404]