PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g27749.1
Common NameOs05g0343700, Os05g0348500, OSNPB_050343700, OSNPB_050348500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 406aa    MW: 43447.4 Da    PI: 8.2226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g27749.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.55.2e-101282278
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
                       pG + +P+d+elv  yL ++++g++l+l     e+d +++ P++L +  +++ +e +f ++++ k+a+gkr++ ++
  LOC_Os05g27749.1 12 LPGPKLDPSDDELVGGYLLRRLQGQPLPL-----EADPLSARPRNLAAD-HGRGDEAFFLAEAQAKNAKGKRQRSTV 82
                      7999**********************999.....79**********844.456679999999999999999887644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-10484IPR003441NAC domain
SuperFamilySSF530983.41E-13240368IPR012337Ribonuclease H-like domain
CDDcd062225.86E-25244365No hitNo description
PROSITE profilePS508799.844244369IPR002156Ribonuclease H domain
PfamPF134563.1E-34245367No hitNo description
Gene3DG3DSA:3.30.420.101.5E-5246368IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAAAAAGADG LLPGPKLDPS DDELVGGYLL RRLQGQPLPL EADPLSARPR NLAADHGRGD  60
EAFFLAEAQA KNAKGKRQRS TVEGQSMCVD GGRLRVPDDG RGGGGLAFSH FLPLSPSIVP  120
SPAPSPRCST STPLSPPKLL ADHGRGDEAA FFADAWAKNG KRQKQRSTVE GGGLWQGQGM  180
LVDGERLRVA DDGGGGSAFL PPSILPSLLP APRCSTPLSP SSPPFRPSRV IVRWARPPPG  240
WCKLNFDGSV FNDGSPRASI GGVIRDSDAG VVLAFAETTE HWTVGVVEAR AMIRGLRFAL  300
ACFIERLVVE GDDLVLVQLI RGEETQTRIP AAMQEEILNL LRCFAEVDVR HIYREGNSVA  360
HTLCRQAYVC PGIWSQRGGG MPAAVWDKVD DDRRGVVHER IRKNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378KGKRQR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WL91
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g27749.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g27749
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354240.0AC135424.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0015F11, complete sequence.
GenBankAC1447420.0AC144742.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0052F16, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.11e-126uncharacterized protein LOC112939071
TrEMBLA0A0P0WL910.0A0A0P0WL91_ORYSJ; Os05g0343700 protein
STRINGONIVA05G13280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713