PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g25770.1
Common NameLOC4338413, Os05g0322900, OSJNBb0109A13.9, OSNPB_050322900, P0018A03.1, WRKY45-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 327aa    MW: 33987.8 Da    PI: 5.6317
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g25770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY741.9e-23117178159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++v+r+++dp    +tY geH+++
  LOC_Os05g25770.1 117 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 178
                       58***************************98878*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-25105180IPR003657WRKY domain
PROSITE profilePS5081120.61112180IPR003657WRKY domain
SuperFamilySSF1182902.48E-23115180IPR003657WRKY domain
SMARTSM007741.4E-34117179IPR003657WRKY domain
PfamPF031065.5E-22118178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTSSMSPAPA PAYAQVMEDM EKGKELAAQL QGLLRDSPEA GRFVDQILHT FSRAMRALDK  60
AAVSAAGGEG SEVQSEVTCG GGASAGGKRK APAADRKANC RRRTQQSSGN SVVVKNLDDG  120
QAWRKYGQKE IQNSKHPKAY FRCTHKYDQL CTAQRQVQRC DDDPASYRVT YIGEHTCRDP  180
ATAPIIAAHV IHQVAAGDND DGCGGLQAGS RLISFVAAPA APVDAAAAPT TSTITTVTAP  240
GPLLQPLKVE GGVGSSDQEE VLSSLTPGSS AARGGGGGGG VAGPFGPDQG DVTSSLHWSY  300
DAVAGMEFFK NDEVVFDLDD IMGLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-47110178169OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.375650.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329762730.0
Expression AtlasQ5W6D6-
Function -- GeneRIF ? help Back to Top
  1. These results point to a model in which WRKY45 modulates a cross talk in resistance against S. hermonthica by positively regulating both salicylic acid/benzothiadiazole and jasmonic acid pathways.
    [PMID: 26025049]
  2. Expression of WRKY45-1, but not WRKY45-2, generated TE-siR815, which in turn repressed ST1, an important component in WRKY45-mediated resistance, by RNA-directed DNA methylation.
    [PMID: 27249351]
  3. Thr266 phosphorylation acts negatively on WRKY45-dependent disease resistance.
    [PMID: 28758876]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g25770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g25770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0662550.0AK066255.1 Oryza sativa Japonica Group cDNA clone:J013058O04, full insert sequence.
GenBankAK1039590.0AK103959.1 Oryza sativa Japonica Group cDNA clone:001-015-C02, full insert sequence.
GenBankAY8706110.0AY870611.1 Oryza sativa (japonica cultivar-group) WRKY45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637594.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0PKS20.0A0A0E0PKS2_ORYRU; Uncharacterized protein
TrEMBLQ5W6D60.0Q5W6D6_ORYSJ; Os05g0322900 protein
STRINGORUFI05G12710.10.0(Oryza rufipogon)
STRINGOS05T0322900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-25WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tao Z, et al.
    A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.
    Plant Physiol., 2009. 151(2): p. 936-48
    [PMID:19700558]
  2. Mutuku JM, et al.
    The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.
    Plant Physiol., 2015. 168(3): p. 1152-63
    [PMID:26025049]
  3. Zhang H, et al.
    Transposon-derived small RNA is responsible for modified function of WRKY45 locus.
    Nat Plants, 2016. 2: p. 16016
    [PMID:27249351]
  4. Ueno Y, et al.
    WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.
    Plant Signal Behav, 2017. 12(8): p. e1356968
    [PMID:28758876]