PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g25600.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 687aa    MW: 77731.2 Da    PI: 6.3479
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g25600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.4e-0615353757
                      CTS-HHHHHHHHHHHHHHHHC CS
          Homeobox 37 lgLterqVkvWFqNrRakekk 57
                      +gLt++q ++WF+ rR k++k
  LOC_Os05g25600.1 15 TGLTDKQLQMWFCHRRLKDRK 35
                      69*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.199136IPR001356Homeobox domain
SuperFamilySSF466892.01E-5242IPR009057Homeodomain-like
CDDcd000863.74E-4236No hitNo description
Gene3DG3DSA:1.10.10.602.1E-41535IPR009057Homeodomain-like
PfamPF105362.4E-59204497IPR019557Aminotransferase-like, plant mobile domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MKTPYQLEVL KRTYTGLTDK QLQMWFCHRR LKDRKPPPKR QQLEEEVHVP VMAPPPVLPP  60
PLPHSELTMA PGGMYGEQLL PSSSRRGTGR PSAILDMSDL QCLPLLTSHA TLKLIDCIPH  120
QGKAWQIVQL DALDERMEHF PGLEDFYEEK HRAPQIASGE RLKTLRVRGH TAHILFDDRY  180
VPYLRRAKLL AFVTMAQRPV PLYNAAALTA LVDRWRPETH TFHLPCGELT VTLEDVAMIL  240
GLPIRGQAVT GDTASGNWRE RVEEYLGLEP PVAPDGQRQT KTSGVPLSWL RANFGQCPAE  300
ADEATVQRYC RAYVLYIFGS ILFPDSGGDM ASWMWLPLLA DWDEAGTFSW GSAALAWLYR  360
QLCDACRRQG GDANLAGCVW LLQVWMWMRL PVGRPMWRTH QAWPHQDADR RPTVAHLWES  420
VPSPVVGRRN LAYYHYTNEM DYLQPEHVVW MPYQAQEVLE LELNPMCHIE DALKTLRCPL  480
ICFYAVEFQM CHRRLRQRCR KLAARLGCRS TDVVEHAHAH QEGDEEGEVG DEEGEQDKEA  540
EEGDEEEEGD EDREEEADEL GPSQLEDAPE SSQPDISQPG PSRPRSRRAP SQDWRYTPDV  600
PRPRTRAPVH LALRSQPSHP EGLLGWATAE TAKSHLSARL AGAEFPNVSA ILAGAEVPAR  660
KPSRRLAGQG HGRNGQVPPQ RQVGWR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g25600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g25600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6065890.0AL606589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621864.10.0protein MAIN-LIKE 1-like isoform X3
RefseqXP_015639075.10.0protein MAIN-LIKE 1-like
TrEMBLC7IXT50.0C7IXT5_ORYSJ; Os01g0265300 protein
STRINGXP_008779449.11e-117(Phoenix dactylifera)