PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g25260.1
Common NameLOC4338394, Os05g0316800, OSJNBa0065C11.6, OSNPB_050316800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 282aa    MW: 30331 Da    PI: 10.3509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g25260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1897146255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +gr+ AeIrdp     +  kr +lg+f+taeeAa+ ++ a+++++g
  LOC_Os05g25260.1  97 RFRGVRRRP-WGRFSAEIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 146
                       69*******.**********9.....445************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1097146IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2097155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2897155IPR001471AP2/ERF domain
SMARTSM003806.7E-3397160IPR001471AP2/ERF domain
PROSITE profilePS5103222.8497154IPR001471AP2/ERF domain
PRINTSPR003671.8E-998109IPR001471AP2/ERF domain
CDDcd000181.59E-22105154No hitNo description
PRINTSPR003671.8E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRPPAMSPAD SLAAGRSRRV GASMPRPKRV RVYFVDADAT DTDSSGDERS RPRVREVIDI  60
DVGAASPAPA PKHPRRLVPT ATAALARRRA GMAASRRFRG VRRRPWGRFS AEIRDPSLQK  120
RLWLGTFDTA EEAAAVYDDA ALRIKGSHAV TNFPSDSDTP SAKAKQMKLH PRRHTTPDKT  180
PSSSTAAAAK ASVPDPTPAP PEEDRANDSS FNPFASPTSV LRYAAADEVT APSFEHLLVE  240
LGDLSAPPPS TKAAEFDWLP WWEGEDFVTA GLTASNAVSV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1993154163ATERF1
3gcc_A2e-1993154163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187104RRAGMAASRRFRGVRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.569441e-148callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5W6X0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g25260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g25260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241410.0AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106130.0AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.10.0ethylene-responsive transcription factor 3
TrEMBLQ5W6X00.0Q5W6X0_ORYSJ; Os05g0316800 protein
STRINGOS05T0316800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.15e-08ERF domain protein 10