PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g23910.1 | ||||||||
Common Name | LOC4338359, Os05g0304800, OsJ_17980, OSNPB_050304800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 328aa MW: 36654.2 Da PI: 5.0985 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 72.5 | 6.4e-23 | 31 | 128 | 2 | 96 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ++ fw + ie ++ ++h lP+ +k++++ +d m+sa++P++++k celf+ eltlr+w+ a++ +r + +dia+a+t t+ + f LOC_Os05g23910.1 31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHF 123 7789976523377777778999*********************************************************************** PP NF-YC 92 lvdiv 96 l ++ LOC_Os05g23910.1 124 LGNVL 128 *8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.62E-16 | 10 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-8 | 53 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-17 | 53 | 128 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MAIPTKEEVE QNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDCVKN 60 VIRPKNDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES 120 YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP 180 PIGQMGTQHK LSPFTFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS 240 DVAIVVQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS 300 QDVAEEDMSN ESLEGSQKDE DLFLHEK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.24936 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011501 | 0.0 | ||||
Expression Atlas | Q0DJB5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g23910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g23910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136525 | 0.0 | AC136525.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0585E02, complete sequence. | |||
GenBank | AC145476 | 0.0 | AC145476.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1023E01, complete sequence. | |||
GenBank | AK242136 | 0.0 | AK242136.1 Oryza sativa Japonica Group cDNA, clone: J075149P12, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | KF737322 | 0.0 | KF737322.1 Oryza sativa Japonica Group clone KCS267A05 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639189.1 | 0.0 | uncharacterized protein LOC4338359 | ||||
TrEMBL | A0A0E0PKE5 | 0.0 | A0A0E0PKE5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A2H4C0A6 | 0.0 | A0A2H4C0A6_ORYSA; Nuclear factor Y transcription factor | ||||
TrEMBL | Q0DJB5 | 0.0 | Q0DJB5_ORYSJ; Os05g0304800 protein | ||||
STRING | ORUFI05G11730.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0304800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13968 | 15 | 28 | Representative plant | OGRP16973 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-18 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g23910.1 |
Entrez Gene | 4338359 |