PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g20930.1
Common NameLOC4338296, Os05g0286100, OSNPB_050286100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 319aa    MW: 35066.3 Da    PI: 7.905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g20930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056587123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ Cg+ F++   L  H+++H
  LOC_Os05g20930.1 65 YSCSFCGREFRSAQALGGHMNVH 87
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-66291No hitNo description
Gene3DG3DSA:3.30.160.602.7E-46389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026587IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-66588IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2176592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDPARYWILA RRKLGDQKAP LFPTPHITIG AGGSSTSYYE SWEERAFAED SAGHLGGCIW  60
PPRSYSCSFC GREFRSAQAL GGHMNVHRRD RARLKLSGVV EDGTGGESHG MPPNQNYMIQ  120
PCPPQIGTLQ HAYSPNPRSG SILAADTNPN SICDVVAYPA RSLLQVAAAR TALGKQVLNA  180
PLVSSKSPSA GREHGKRETL FLGAVRLAQD HDTVSSNLDL RVGKNELKIT TVLGCRSRRD  240
FMYDNDRADD EKTVEASHKK RRIDLEVNPL ILTSSTSNHQ QQDGGDDQHH EKILKLYRSS  300
SVEELDLELR LGEAPKEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-126087229superman protein
2l1o_A2e-126087229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.558060.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166381890.0
Expression AtlasQ0DJG4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g20930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g20930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444520.0AC144452.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0025G07, complete sequence.
GenBankAK1088290.0AK108829.1 Oryza sativa Japonica Group cDNA clone:002-151-G02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCT8289470.0CT828947.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638381.10.0uncharacterized protein LOC4338296
TrEMBLA0A0E0PK500.0A0A0E0PK50_ORYRU; Uncharacterized protein
TrEMBLA2Y2R50.0A2Y2R5_ORYSI; Uncharacterized protein
TrEMBLQ0DJG40.0Q0DJG4_ORYSJ; Os05g0286100 protein
STRINGORUFI05G10920.10.0(Oryza rufipogon)
STRINGOS05T0286100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.14e-26C2H2 family protein