PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g11510.1 | ||||||||
Common Name | LOC4338069, Os05g0204600, OSJNBa0015G13.14, OSNPB_050204600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 379aa MW: 39399.8 Da PI: 5.6933 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.6e-06 | 40 | 78 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +e e++ C ++ lC+ C +H H LOC_Os05g11510.1 40 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 78 7******99*********************544555555 PP | |||||||
2 | zf-B_box | 31 | 5.1e-10 | 104 | 144 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e ++ +fC +++ llC++C ++ H H LOC_Os05g11510.1 104 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 144 789******99*******************99545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.196 | 36 | 83 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-10 | 36 | 83 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.22E-5 | 40 | 71 | No hit | No description |
SuperFamily | SSF57845 | 7.32E-5 | 99 | 142 | No hit | No description |
SMART | SM00336 | 1.4E-15 | 102 | 149 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-8 | 104 | 136 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.90E-9 | 106 | 149 | No hit | No description |
PROSITE profile | PS50119 | 9.542 | 107 | 149 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSPPPPPYYH HLLLLRSSPT TTGGGARVLA AAELARMKLL CSACEAAEAS VLCCADEAAL 60 CARCDRDIHA ANRLAGKHLR LPLLSPASSS SSSAAALAPP PPSPPKCDIC QESHAYFFCL 120 EDRALLCRSC DVAVHTANAF VSAHRRFLLT GVQVGQEQDE HSPDPPEPSP PPPPPPPASK 180 SDHPAPLYGE GGGGFSWDAA DSPAAGGLPD WSAVVDQFGS PPPPRHTDTA TVTTPPPTKR 240 SPRAPAFGGQ GGMMDWPLGE FFGGFTDFTG GFGFGFGDSG TSKADSGKLG GSTDGSPYYR 300 SSSEDDRNAD ELFGQVPEIQ WSVPELPSPP TASGLHWQRH PAATHGGGGG GPDTTAFVPD 360 ICSPDSCFPA TTSKRRRQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27817 | 0.0 | flower| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115462582 | 0.0 | ||||
Expression Atlas | Q6ATK0 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g11510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g11510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106865 | 0.0 | AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638101.1 | 0.0 | B-box zinc finger protein 22 | ||||
TrEMBL | A0A0E0PIT3 | 0.0 | A0A0E0PIT3_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6ATK0 | 0.0 | Q6ATK0_ORYSJ; Os05g0204600 protein | ||||
STRING | ORUFI05G07170.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0204600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-42 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g11510.1 |
Entrez Gene | 4338069 |
Publications ? help Back to Top | |||
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