PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g11380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 149aa    MW: 16509.4 Da    PI: 4.9721
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g11380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-273584251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +ie++  rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+
  LOC_Os05g11380.1 35 SIEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84
                      8***********************************************95 PP

2K-box21.78.1e-09101134336
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqR 36 
                       +s+++ ++e +a+++qqe+akLk+ i  Lq+++R
  LOC_Os05g11380.1 101 TSNTSTVAEINAQHYQQEAAKLKQHITYLQNSNR 134
                       34444499**********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-242685IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.5252686IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-232848IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-263499IPR002100Transcription factor, MADS-box
PfamPF003191.5E-243682IPR002100Transcription factor, MADS-box
CDDcd002652.39E-3536100No hitNo description
PRINTSPR004041.2E-234863IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-236384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SEGSSIEDTA DRQVTFCKRC NGLLKKAYEL  60
SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNTSTVAEI NAQHYQQEAA  120
KLKQHITYLQ NSNRFIISLS CLDFFFST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-162794269Myocyte-specific enhancer factor 2B
1tqe_Q1e-162794269Myocyte-specific enhancer factor 2B
1tqe_R1e-162794269Myocyte-specific enhancer factor 2B
1tqe_S1e-162794269Myocyte-specific enhancer factor 2B
6c9l_A1e-162794269Myocyte-specific enhancer factor 2B
6c9l_B1e-162794269Myocyte-specific enhancer factor 2B
6c9l_C1e-162794269Myocyte-specific enhancer factor 2B
6c9l_D1e-162794269Myocyte-specific enhancer factor 2B
6c9l_E1e-162794269Myocyte-specific enhancer factor 2B
6c9l_F1e-162794269Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.851241e-179flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}.
UniprotTISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g11380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g11380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2321571e-123AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBankAK1117231e-123AK111723.1 Oryza sativa Japonica Group cDNA clone:J023027E19, full insert sequence.
GenBankFJ7509421e-123FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881105.12e-96MADS-box transcription factor 58-like isoform X1
SwissprotQ2V0P19e-74MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A0D9ZVH98e-94A0A0D9ZVH9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZVI07e-95A0A0D9ZVI0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HAW69e-91A0A0E0HAW6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0HAW77e-91A0A0E0HAW7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0HAW87e-91A0A0E0HAW8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PIS35e-95A0A0E0PIS3_ORYRU; Uncharacterized protein
TrEMBLB8AZ835e-95B8AZ83_ORYSI; Uncharacterized protein
STRINGOGLUM05G06890.11e-94(Oryza glumipatula)
STRINGORUFI05G07090.18e-96(Oryza rufipogon)
STRINGONIVA05G07370.11e-91(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4046733
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]