PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g11070.1
Common NameOs05g0199800, OSNPB_050199800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 413aa    MW: 44202.7 Da    PI: 9.9993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g11070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11236280554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  LOC_Os05g11070.1 236 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 280
                       7789*********************9.....9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16229300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-10233285No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14235298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9236280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ  60
QQLSQIYMLM DMEEHDHQYA TPPSPSSSSF RSFSAGTTTT TTSRDDNSSL MLAAAAASCH  120
HQTTEVSSQI LLPRPGQAAR RSSGGHGAAA AATAFRPYSR YLGPKKHLLR RPGAATTATG  180
GGGGQRAFKK AISVLSKIHA ARLAQYYQIM EMAARASPAA TAGGGGGENQ QLQLQHVLSE  240
RKRREKLNDS FKALRDVLPP ATKKDKASVL MRAKDYVNVL KARIAELEEK NRKLSESQQL  300
HAGDGDGERD DGPDDDKIEV NTSRSAADQG SSPNKCQELH LKIVLGSSSG CSAMDAVAGI  360
LQGLNEKRDV SLLATGHNSS SSSSSGRRRL LPRAKSSQQP AVRLQTLCKL SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244ERKRRE
2240245RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.552120.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154625580.0
Expression AtlasQ0DK30-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g11070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g11070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.10.0transcription factor PIF1
TrEMBLQ0DK300.0Q0DK30_ORYSJ; Os05g0199800 protein
STRINGOS05T0199800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-17bHLH family protein