PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g09630.2
Common NameOs05g0188600, OSNPB_050188600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 589aa    MW: 64892.9 Da    PI: 5.6941
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g09630.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox162.1e-05350410154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       rrkRt +++ q++e e++   ++ +  +a+  +  ++kl     ++t +q k+W  Nr+ak
  LOC_Os05g09630.2 350 RRKRTIMNDRQINEIEKALIDEPEMhkNAALLQAWSEKLsgqgsEITSSQLKNWLNNRKAK 410
                       89*****************986666115566899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-5332411IPR009057Homeodomain-like
PROSITE profilePS5007110.122347414IPR001356Homeobox domain
CDDcd000860.0038350413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MFYSSPFCSS PLQIPFLTQI LAIPHDEFVS NWCSVNLPVI EEDANLDYDP FGAAELALAA  60
AGNKLTEAKA NYSCPFRPIS MPSIAYAQTR TSCVVKIIAN LHVFVPNICE EQERDLFLQK  120
FQKYLVSGNP RSSVDHPASA DLKATTVCRN LGSLSEYARS LIPNNLLNEE DVQLLSEFAY  180
KLQTWCKSHV GQSTSQAVKI DPSSESKEDF KPLQHPLIPS TVVPDSSINN LPKNMEEPTP  240
TNMEEPAPTP STKQEGNARD ETPRSTVALN GGFLQNSVGQ DLVHLGVART SSGFLGGGTS  300
TSTGSLRCKM DLDPASSSMD HFKTPDRKES GLQDDEKGDT HMYDERQPKR RKRTIMNDRQ  360
INEIEKALID EPEMHKNAAL LQAWSEKLSG QGSEITSSQL KNWLNNRKAK LARIAKERGV  420
LSEGENADKP STPATPHHCD SSESAGEESY LPPARVMSAL GISKGSRFVS PDGNETTSQA  480
EFNQNIMLSR PFTRSFSFEP GRLVSLIDND GKEVGRGKIF QVEGRLQGKA LTDTRVCIVD  540
VIELKIEKWR ELPHPSEASG RTFQEAESRN GGVMRVAWDV IRLSPVVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.237600.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379881900.0
Expression AtlasA0A0P0WIW7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g09630.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g09630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116740.0AK111674.1 Oryza sativa Japonica Group cDNA clone:J013157O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640317.10.0nodulin homeobox isoform X1
RefseqXP_015640318.10.0nodulin homeobox isoform X1
RefseqXP_015640319.10.0nodulin homeobox isoform X1
TrEMBLA0A0P0WIW70.0A0A0P0WIW7_ORYSJ; Os05g0188600 protein (Fragment)
STRINGOS05T0188600-020.0(Oryza sativa)