PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g09630.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 673aa    MW: 74153.7 Da    PI: 5.8363
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g09630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-05434494154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       rrkRt +++ q++e e++   ++ +  +a+  +  ++kl     ++t +q k+W  Nr+ak
  LOC_Os05g09630.1 434 RRKRTIMNDRQINEIEKALIDEPEMhkNAALLQAWSEKLsgqgsEITSSQLKNWLNNRKAK 494
                       89*****************986666115566899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-5416495IPR009057Homeodomain-like
PROSITE profilePS5007110.122431498IPR001356Homeobox domain
CDDcd000860.00427434497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MSRLKAKILS ILLQLCEAET VSYLDEVATS PKSMQLGQTL ALEVLDLLKT AFGRKQKLTL  60
DSHDKSYPMG SVLISALRLV DVFSDDSNFR SSFITNTIPF LTQILAIPHD EFVSNWCSVN  120
LPVIEEDANL DYDPFGAAEL ALAAAGNKLT EAKANYSCPF RPISMPSIAY AQTRTSCVVK  180
IIANLHVFVP NICEEQERDL FLQKFQKYLV SGNPRSSVDH PASADLKATT VCRNLGSLSE  240
YARSLIPNNL LNEEDVQLLS EFAYKLQTWC KSHVGQSTSQ AVKIDPSSES KEDFKPLQHP  300
LIPSTVVPDS SINNLPKNME EPTPTNMEEP APTPSTKQEG NARDETPRST VALNGGFLQN  360
SVGQDLVHLG VARTSSGFLG GGTSTSTGSL RCKMDLDPAS SSMDHFKTPD RKESGLQDDE  420
KGDTHMYDER QPKRRKRTIM NDRQINEIEK ALIDEPEMHK NAALLQAWSE KLSGQGSEIT  480
SSQLKNWLNN RKAKLARIAK ERGVLSEGEN ADKPSTPATP HHCDSSESAG EESYLPPARV  540
MSALGISKGS RFVSPDGNET TSQAEFNQNI MLSRPFTRSF SFEPGRLVSL IDNDGKEVGR  600
GKIFQVEGRL QGKALTDTRV CIVDVIELKI EKWRELPHPS EASGRTFQEA ESRNGGVMRV  660
AWDVIRLSPV VQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.237600.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379881900.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g09630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g09630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115270.0AK111527.1 Oryza sativa Japonica Group cDNA clone:J013021F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640317.10.0nodulin homeobox isoform X1
RefseqXP_015640318.10.0nodulin homeobox isoform X1
RefseqXP_015640319.10.0nodulin homeobox isoform X1
TrEMBLI1PT270.0I1PT27_ORYGL; Uncharacterized protein
STRINGORGLA05G0052500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418
Representative plantOGRP385357