PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g07270.1 | ||||||||
Common Name | Os05g0165450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 21567.6 Da PI: 8.8075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 2e-40 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ae LOC_Os05g07270.1 27 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAE 119 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++ LOC_Os05g07270.1 120 LAAVRAD 126 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.227 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-40 | 27 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MARRSCSMPA AGAGPGSAAA AVNTITPCAA CKLLRRRCAQ ECPFSPYFSP LEPHKFASVH 60 KVFGASNVSK MLLEVHESQR GDAANSLVYE ANLRLRDPVY GCMGAILTLQ QQVQALEAEL 120 AAVRADIVRH KYRLPSAAAV LPSSHASHLL AAAAAARQLP VAGTMGVVTT ATLPASASSS 180 STTAVYAAAS SSTDYSSITN ENVPYFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 27 | 130 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 27 | 130 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | C7J2W5 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g07270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g07270 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134341 | 0.0 | AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881485.1 | 1e-149 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q9AT61 | 1e-66 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | C7J2W5 | 1e-147 | C7J2W5_ORYSJ; Os05g0165450 protein | ||||
STRING | ORUFI05G04770.1 | 1e-148 | (Oryza rufipogon) | ||||
STRING | OS05T0165450-00 | 1e-147 | (Oryza sativa) | ||||
STRING | ONIVA05G04920.1 | 1e-148 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-58 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g07270.1 |
Publications ? help Back to Top | |||
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