PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g07120.1 | ||||||||
Common Name | LOC4337905, Os05g0163900, OSJNBa0027N19.3, OSJNBb0099P06.13, OSNPB_050163900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29871.8 Da PI: 9.6186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 70 | 114 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr++lP a k ++Ka+ L +v+ +k+L LOC_Os05g07120.1 70 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 114 9*************************.....67*************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.132 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-12 | 69 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 69 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 70 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.16E-6 | 153 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.9E-6 | 154 | 205 | No hit | No description |
PROSITE profile | PS51671 | 10.394 | 156 | 236 | IPR002912 | ACT domain |
CDD | cd04873 | 1.63E-6 | 158 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP RPSSSSGRSA 60 AAQATAMTIH SEAERRRRER INAHLATLRR ILPDAKQMDK ATLLASVVNQ VKHLKTRATE 120 ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARTYVRATVS CDDRPGLLAD IAATFRRLRL 180 RPLSADMSCL GGRTRHAFVL CREEEEEEDA AAEARPLKEA VRQALAKVAL PETVYGGGGR 240 SKRQRLMMES RYSTAVVHTH VDPQYCWYNS R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 78 | ERRRRE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32995828 | 0.0 | ||||
Expression Atlas | Q75IR0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g07120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g07120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110619 | 0.0 | AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638377.1 | 0.0 | putative transcription factor bHLH107 | ||||
Refseq | XP_015638378.1 | 0.0 | putative transcription factor bHLH107 | ||||
Refseq | XP_015638379.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | Q75IR0 | 0.0 | Q75IR0_ORYSJ; Os05g0163900 protein | ||||
STRING | OS05T0163900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g07120.1 |
Entrez Gene | 4337905 |