PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g04740.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 536aa    MW: 56417.2 Da    PI: 6.5393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g04740.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-133754151055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +rRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  LOC_Os05g04740.2 375 QRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 415
                       79******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-13363419No hitNo description
PROSITE profilePS5088814.678365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10375415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16375423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16375427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL PPDYCAALLS GLSDHLPPPA  120
AAASRVDPDP CSSSHGAVVP STSAAAAKQA RTSGGGGGGV MNFTFFSRPL QQRPSGGETA  180
SASASAAATS TVPVESTVVQ AATNRLRSTP LFSDQRMAWL HPPKPSPRAA APPPPPPLAP  240
TTRHRLDTAA ATATVAQRLP PSEARAPDAP PPAATATATT SSVCSGNGDR RQLNWRDSHN  300
NQSAEWSASQ DELDLDDELA GVHRRSAARS SKRSRTAEVH NLSERVSTHT MHHPQHPRRV  360
MTSSHLAIEL LSSSQRRRDR INEKMRALQE LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM  420
MSMGTGMFVP PMMLPAAAAA MQHHHMQMQQ MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA  480
AQFPCPMFPA APPMSMFAPP PPPPPFPHAA ATAVEQTPSP PGAADAGNAP AVKQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.615170.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567645730.0
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g04740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g04740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6679000.0AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds.
GenBankAK2879580.0AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638281.10.0transcription factor APG isoform X1
SwissprotQ6AT900.0APG_ORYSJ; Transcription factor APG
TrEMBLA0A0D9ZTY80.0A0A0D9ZTY8_9ORYZ; Uncharacterized protein
STRINGOGLUM05G02640.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-25phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]