PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g04740.1
Common NameAPG, LOC4337752, Os05g0139100, OSJNBa0069I13.9, OSJNBb0111O13.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 506aa    MW: 53029.4 Da    PI: 6.2526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g04740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16339385455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  LOC_Os05g04740.1 339 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 385
                       5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.51E-18331389No hitNo description
SuperFamilySSF474596.28E-21332397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-21332393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-14339385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MLRGNDTGSD LAELLWDNGA PAPLRPPPPP PFQPFTCSAA ATTSPPAHDY LFIKNLMRGG  60
GAANHHHHDD DDDDDDDVPW LHYHPVVDDD DDADADTAPL PPDYCAALLS GLSDHLPPPA  120
AAASRVDPDP CSSSHGAVVP STSAAAAKQA RTSGGGGGGV MNFTFFSRPL QQRPSGGETA  180
SASASAAATS TVPVESTVVQ AATNRLRSTP LFSDQRMAWL HPPKPSPRAA APPPPPPLAP  240
TTRHRLDTAA ATATVAQRLP PSEARAPDAP PPAATATATT SSVCSGNGDR RQLNWRDSHN  300
NQSAEWSASQ DELDLDDELA GVHRRSAARS SKRSRTAEVH NLSERRRRDR INEKMRALQE  360
LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGMFVP PMMLPAAAAA MQHHHMQMQQ  420
MAGPMAAAAH FPHLGAAAAM GLAGFGMPAA AQFPCPMFPA APPMSMFAPP PPPPPFPHAA  480
ATAVEQTPSP PGAADAGNAP AVKQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343348ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.615170.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567645730.0
Expression AtlasQ6AT90-
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g04740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g04740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879580.0AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638282.10.0transcription factor APG isoform X2
SwissprotQ6AT900.0APG_ORYSJ; Transcription factor APG
TrEMBLA0A0E0PH890.0A0A0E0PH89_ORYRU; Uncharacterized protein
STRINGOS05T0139100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Heang D,Sassa H
    Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice.
    PLoS ONE, 2012. 7(2): p. e31325
    [PMID:22363621]
  3. Heang D,Sassa H
    An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG.
    Breed. Sci., 2012. 62(2): p. 133-41
    [PMID:23136524]