PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g04640.1 | ||||||||
Common Name | OJ1127_B08.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 503aa MW: 52274.4 Da PI: 7.3131 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed++++++tYeg+H h+ LOC_Os05g04640.1 249 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDKSILITTYEGTHSHP 307 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-33 | 233 | 309 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 241 | 309 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.185 | 243 | 309 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-35 | 248 | 308 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 250 | 307 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MEMMVQKQRH EEGEEERGGL CAREIKELDF FSAAGAGAGR RDDDDVLRAD GISSSHAGFM 60 VSTALDLLTA VNDGDHHEEK KGQSNIHQSK QMDAAATTVE GELRQAGEEN RRLRRRLEEL 120 TSSYGALYHQ LVQAQQLHTK HQQQAPIAGV QLLDALAAAS PASHRRRAAA AVDGDRTADS 180 DGGEGDENVS PSLGSKRPAA AATLTRLTPE SGSGGENNGG GEQAPAAEMA PCRKARVSVR 240 ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMASQC PVRKQVQRCA EDKSILITTY 300 EGTHSHPLPP AAAAMAKTTS AAAAMLLSGP AVSRDALFAA HHHVVAPPPF FHHPYAGSTM 360 ATLSASAPFP TITLDLTQPP PTTTTTAAAA MLQLHRPYAF SSLPFSMYGA GGGSHRPPVV 420 LPPPSSVVET MTAAITRDPN FTTAVAAALS SIMAGGGAQA RTPPRGGSDA AGDINGGGGA 480 DHATAGARAA AAATQPCGTS PT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-21 | 239 | 309 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 7e-21 | 235 | 311 | 1 | 76 | WRKY transcription factor 1 |
2lex_A | 8e-21 | 239 | 309 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75L34 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g04640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g04640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638124.1 | 0.0 | probable WRKY transcription factor 47 isoform X1 | ||||
TrEMBL | Q75L34 | 0.0 | Q75L34_ORYSJ; WRKY transcription factor 5 | ||||
STRING | ORUFI05G02660.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ORGLA05G0024100.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G02580.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 2e-43 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g04640.1 |