PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g03900.2 | ||||||||
Common Name | Os05g0129800, OSNPB_050129800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 27598.2 Da PI: 7.5567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.3 | 9.5e-11 | 39 | 60 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 D ++WrKYGqK++kgs++pr LOC_Os05g03900.2 39 ADSWSWRKYGQKPIKGSPHPRY 60 69******************95 PP | |||||||
2 | WRKY | 46.6 | 6.9e-15 | 123 | 164 | 19 | 59 |
SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++r+YY+C+s gCp++k+v+++++d ++++itY+++Hnh+ LOC_Os05g03900.2 123 AVSRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 164 579******9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 31 | 58 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-8 | 33 | 62 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-23 | 38 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.244 | 40 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-6 | 40 | 60 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-12 | 122 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-11 | 123 | 164 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 126 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHPRY 60 HHLALIPHTY TAPNVLVISQ SFACALILYI TDNFTRIRLS DQLLVRFFSL YQSIIFALFV 120 DHAVSRGYYK CSSYRGCPAR KQVDKCRNDA SLLIITYTSD HNHDNYAATT TNSVQEQAHN 180 PDTSDPLSNG MSLAEVVTVA SSKLSGEEES CDFFDELEEL PVSASPLPSL SFMVQECSFS 240 DARTLL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.102960 | 0.0 | leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764677 | 0.0 | ||||
Expression Atlas | C7J2F1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g03900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g03900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241799 | 0.0 | AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence. | |||
GenBank | AK288062 | 0.0 | AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639937.1 | 1e-83 | probable WRKY transcription factor 69 | ||||
TrEMBL | C7J2F1 | 0.0 | C7J2F1_ORYSJ; Os05g0129800 protein | ||||
STRING | OS05T0129800-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 9e-15 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g03900.2 |