PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03865.1
Common NameLOC4337699, Os05g0129300, OsJ_16993, OSJNBa0056I11.13, OSNPB_050129300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 149aa    MW: 15955 Da    PI: 9.9973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03865.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.47.6e-142483463
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       ++ +r+ +NRe+ArrsR+RK++++eeL  +++ L+aeN +   ++  +  e +k++ e+
  LOC_Os05g03865.1 24 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGEN 83
                      5678999**********************************9999999998888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-182185IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.32386IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-112378No hitNo description
PfamPF001708.6E-102579IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-102577No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSSPSRRSSS PESNTSGGGG GADERKRKRM LSNRESARRS RARKQQRLEE LIAEAARLQA  60
ENARVEAQIG AYAGELSKVD GENAVLRARH GELAGRLQAL GSVLEILQVA GAPVDIPEIP  120
DDPLLRPWQP PFAAQPIVAT AMADAFQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744RRSRARKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33730.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ688Q7
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03865
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305980.0AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAK0651800.0AK065180.1 Oryza sativa Japonica Group cDNA clone:J013002D17, full insert sequence.
GenBankAK1048440.0AK104844.1 Oryza sativa Japonica Group cDNA clone:001-042-G08, full insert sequence.
GenBankAK1051380.0AK105138.1 Oryza sativa Japonica Group cDNA clone:001-102-F02, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankX573250.0X57325.1 Rice lip19 mRNA for basic/leucine zipper protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639544.11e-101ocs element-binding factor 1
SwissprotP240683e-34OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA2Y0021e-100A2Y002_ORYSI; Uncharacterized protein
TrEMBLQ084181e-100Q08418_ORYSA; Basic/leucine zipper protein
TrEMBLQ688Q71e-100Q688Q7_ORYSJ; BZIP transcription factor
STRINGOS05T0129300-021e-100(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.18e-25basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]
  2. Aguan K,Sugawara K,Suzuki N,Kusano T
    Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif.
    Mol. Gen. Genet., 1993. 240(1): p. 1-8
    [PMID:8341255]