PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03800.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 905aa    MW: 103832 Da    PI: 8.1149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.42.7e-24153244190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn+YAk+ GFsvrk+  +++kr g i  r+fvCskeg r+++  k ++  rr+ra t+++C a+l +k++k +g w v+++  eHnH+l+
  LOC_Os05g03800.1 153 NFYNSYAKRKGFSVRKDIVRREKRVGAIEYRHFVCSKEGIRDPSLVKpEDCVRRERALTQMECAASLSIKLDKkHGIWFVDNFIDEHNHPLT 244
                       6******************************************98885778899******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-21153244IPR004330FAR1 DNA binding domain
PfamPF105517.4E-32366458IPR018289MULE transposase domain
PROSITE profilePS5096610.484534584IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-7558583IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4559586IPR006564Zinc finger, PMZ-type
SuperFamilySSF577565.76E-5694732IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614711726IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MSVHGTERLG TAQPAADGKE FGGGALHRVR PRRLPRSQPP LASKAKVLGR LAFPALLAEA  60
SDYIAALEMQ VTGKICKKFE RVEICVISQA EYMLRDQNGD QVWFNILPKY QFGNKDDAKC  120
GKDCSTDSYM DNSSNTNDDD YAECSLTEDE CYNFYNSYAK RKGFSVRKDI VRREKRVGAI  180
EYRHFVCSKE GIRDPSLVKP EDCVRRERAL TQMECAASLS IKLDKKHGIW FVDNFIDEHN  240
HPLTSHDETP FLRSHRKIKD FQKSEIHSLE SIGIRKNVIM KVMKCKYGGY DKVGFVKKDL  300
YNYSSRYKRS RILEGDASAT LELMKKRRDK DPGFFYEYQV DDEGRLKNLF WCDAQSRMDY  360
QSFGDVVVFD STQRMNKYNM PFIPFVGLNH HRQTTIFACG IVSDECVESY TWFLQVFLRA  420
MCQQKPRSII TDSDNAMMKA ICQVLPDTDH RVCSWHIERV EHYEVCVSEL REKVAEFDSK  480
ASQSWPATIT DSPEIEESAG HIFTSANFDL VQKELQKLDG LHVDVVQDGK GERYMVTSKQ  540
KSARKCYVDY TRIGGNHDIR CSCRKMEREG IPCKHILSVL KHLEVKEIPK CCVLQRLSKN  600
AKAGLPSVRK SDLHVWTEKQ KNYYELNARG SELFDLASNS RELFREVKEY MESQLSKISS  660
SNAATKKHTH VDEVGETSHR PEGSVLDPIC VATKGAPRRM KGWDEHRPRL CSRCHQPGHD  720
IRRCPEAKRE EQDLALIESL KIAVILYDIN LHCLETLRVK DEELQNLANN IRARDATIKK  780
IADKLTQTAE AAEAAASVAH TLDGHRILLC SEIERLRHYK QWKDKWNNPC SRLSKEKDQL  840
LKERDAALQE AHMWRTELGK AREQAVVQEA TIARADEKLR ASEADAWVYY LHIAICYSAV  900
VVPD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329KKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.831841e-142panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305980.0AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9FM970.0B9FM97_ORYSJ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-70FAR1-related sequence 5