PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03760.1
Common NameLOC4337692, Os05g0128200, OSJNBa0056I11.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 602aa    MW: 63235.9 Da    PI: 8.4664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17e-09257278526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f+++G C+ Gd C +aHg
  LOC_Os05g03760.1 257 PCPEFRKGGSCRKGDACEYAHG 278
                       8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.6E-770148IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-971166IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.33771168IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.502106141IPR002110Ankyrin repeat
SMARTSM003561.2E-5252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216252280IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6257278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4257280IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559288312IPR000571Zinc finger, CCCH-type
SMARTSM0035689288311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MCSGPRKPST PPLPQQQKEA TVMAASLLLE LAAADDVAAV RRVVEEEKVS LGVAGLWYGP  60
SASGVARLGM ERRTAAMVAA LYGSTGVLGY VVAAAPAEAA RASETDGATP LHMAAAGGAA  120
NAVAATRLLL AAGASVDALS ASGLRAGDLL PRATAAEKAI RLLLKSPAVS PSSSPKKSAS  180
PPSPPPPQEA KKEYPPDLTL PDLKSGLFST DEFRMYSFKV KPCSRAYSHD WTECPFVHPG  240
ENARRRDPRR YSYSCVPCPE FRKGGSCRKG DACEYAHGVF ECWLHPAQYR TRLCKDEVGC  300
ARRICFFAHK PDELRAVNPS AVSVGMQPTV SSPRSSPPNG LDMAAAAAAM MSPAWPSSPA  360
SRLKTALGAR ELDFDLEMLA LDQYQQKLFD KVSGAPSPRA SWGAAANGLA TASPARAVPD  420
YTDLLGSVDP AMLSQLHALS LKQAGDMPAY SSMADTTQMH MPTSPMVGGA NTAFGLDHSM  480
AKAIMSSRAS AFAKRSQSFI DRGGRAPAAR SLMSPATTGA PSILSDWGSP DGKLDWGVQG  540
DELHKLRKSA SFAFRGQSAM PVATHAAAAE PDVSWVNSLV KDGHAAGDIF AQWPEQEQMV  600
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.117740.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2170309460.0
Expression AtlasQ688R3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305980.0AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAK1057670.0AK105767.1 Oryza sativa Japonica Group cDNA clone:001-202-E04, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankEU8475220.0EU847522.1 Oryza sativa Japonica Group clone OsLS310 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639743.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLB7EYA70.0B7EYA7_ORYSJ; Zinc finger protein
STRINGOS05T0128200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]