PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g03550.1 | ||||||||
Common Name | OsJ_16973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 1581aa MW: 170922 Da PI: 6.7024 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 727 | 769 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ LOC_Os05g03550.1 727 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 769 899***************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-13 | 710 | 772 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.547 | 723 | 774 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-7 | 724 | 772 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 727 | 771 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-6 | 727 | 769 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.728 | 932 | 983 | IPR017884 | SANT domain |
SMART | SM00717 | 6.6E-4 | 933 | 981 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00121 | 937 | 975 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-8 | 937 | 983 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1581 aa Download sequence Send to blast |
MAAGTTATPS HRQPPRRRDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL DDDGGGGGYK 60 GFSRYGGGGG GGSRRDGRDM RGSYRRSPFR GYGSDFSRNH QEHPPPPLRR SPLRSVAVPM 120 SYDPPGDRAD RGDRDHHHRV TPWRPLRRRE SRSDAADAAG AGPVPVGQAA AAAASEKDVS 180 ARSSAVAAPQ VSEEEAPRKK PRLGWGQGLA KYEKQKVQGP AESAEAVAEG SPTATEQKGI 240 THTPAPAPCV SPVAAPSPTP CASPVAAPSP APCVSPVAAP SPAPPCKSPV PEDKSCELTA 300 NTVTESNKNI PGPDVQACNN EVPTKLDQLE GDPIDSLAKV LSELVQHEDS CSGDSKRLSN 360 VSKLLLLKES ISKELEKTEL EIDSLEGELK SVNVEARNRT LKDPPTAVTY AQNPSPSPVK 420 EQGELTPSPK ISMEQDADVK GSELMEIETA QAHNAKAVSS EESVACPGVA LGQVPAAADV 480 IPSDPCGKTG SGIDVDIEQR EENPCQETFN AMKADGSSDL ATRPCSYREV KYNLMDQIIA 540 ANRSEAKKNS QLLFKPVPAD RSNLDLLASS YLSSQMKNDV IIKKKHAILK NRQRFKEQIL 600 TFKFRVLRHL WKEDVRLLSV RKQRSKSHKR TDQSNRSSQS GSQRQRSSNR SRLAVPAGNL 660 STFPITEMSG VARKLFSEFQ LKRCRNYLKM PALIVDEKEK AGAKFVSKNG LVEDPVSVEK 720 ERALINPWIQ EEKEIFMEKL ATFGKDFSKI SSFLQHKTTA DCIEFYYKHH KSDSFREVKK 780 LLDLRQQQQP ANNYLGAVSG KKWNPEANAA SLDMLGVATE VAAQGLEYVN EVKKNSAKSI 840 LRTVCGVDNS TKGSEKDCVG DVSLHERESV AADVLAGICG TLSPEGMGSC ITSSADPGQK 900 IGIISRMEHL LTPEADKNFD DDGTLSDQEC EVDIVDWNDD EKSSFIEAMN RYGKDFARIS 960 SYVKSKSFEQ CKVFFSKARK SLGLDLIHQG AADAGFPTGD ANGGRSGTDG ACIAEMDSAI 1020 CSAQSCPKVE IDACPVSDGE IQGHNPLSDI ASRQPEADKS NMPDVVDINV EEGESKAEKD 1080 CSILVDHKQL REDINQTSCA RIDINCPEST DKLQDIEDVT PVNMHGDDLM ATSVEQVAAA 1140 HVESRSSLHS EGIGIDVSRI EGCSHESTIG KGGKSTPSVC LPAENGVSKE NIIHFSNMDG 1200 ASSISPAFTS NYQQSKLADP IQSKPKPLTP KDLMPVQFSS SLPDPTSICF EGIAAITTPN 1260 FEDHGNRASI ASGAKDVNMF PTFKDQSSNR HDALFSNVDG YMQQRRNNHF GTEVCGLSES 1320 TGISQSDQFT VSKFQNGRPS SLGLSNGNLG VLSTGRREEA REGLFRPCSV KTSAGNEEQQ 1380 KRPGDVKLFG QILSHQSSLQ SSGSSVHGSK SKPPSPKVDK PASSRLLSNP RERLVYSSRP 1440 PIIANLGLEE RAMRSFDHMD GRTIQPEPMV MVAKCQRPSA GVPVYSTKNG ALSVFAEFQQ 1500 PSMPPHTSDH KLLENFADLH KRNGIELLSG FQQPGRLGGA GVLVSGVSDP VAALKAQYGS 1560 GSKMLSSSND VDTWKDIGSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 6e-16 | 685 | 776 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 6e-16 | 685 | 776 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10447 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297723660 | 0.0 | ||||
Expression Atlas | B9FGL5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g03550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g03550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070653 | 0.0 | AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639126.1 | 0.0 | uncharacterized protein LOC9268524 | ||||
Refseq | XP_015639127.1 | 0.0 | uncharacterized protein LOC9268524 | ||||
Refseq | XP_015639128.1 | 0.0 | uncharacterized protein LOC9268524 | ||||
Refseq | XP_015639129.1 | 0.0 | uncharacterized protein LOC9268524 | ||||
TrEMBL | B9FGL5 | 0.0 | B9FGL5_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI05G01980.4 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 | Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 9e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g03550.1 |