PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g03160.1
Common NameOJ1729_E02.9, Os05g0123000, OSNPB_050123000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 146aa    MW: 14935 Da    PI: 4.7543
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g03160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.73.9e-19116645100
            DUF260  45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                        l++lpee+r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ lka+la++++e
  LOC_Os05g03160.1  11 WLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAE 66 
                       5899************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.902167IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-171164IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASSPLMSPS WLQELPEEQR ADAVSSMVYE ANARIRDPVY GCAGAICQLQ KQVNDLKAQL  60
ARAHAELAGA RAQHAHLVAL LCMEMAAAAP PQHPTTTAAA AAYCAAVGGA ASPAAPVDAL  120
YVVDGAGAAA MQASPIGWVD EPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-17106754111LOB family transfactor Ramosa2.1
5ly0_B2e-17106754111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75L85
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g03160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g03160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790210.0AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBankAC0930890.0AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638880.13e-90LOB domain-containing protein 1
TrEMBLA2XZV17e-98A2XZV1_ORYSI; Uncharacterized protein
TrEMBLI1PS171e-96I1PS17_ORYGL; Uncharacterized protein
TrEMBLQ75L857e-98Q75L85_ORYSJ; Os05g0123000 protein
STRINGOS05T0123000-001e-98(Oryza sativa)
STRINGORGLA05G0016500.12e-97(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-20LOB domain-containing protein 1