PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g03090.1 | ||||||||
Common Name | OJ1001_G01.16, OJ1729_E02.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 941aa MW: 108151 Da PI: 6.6667 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.7 | 3.9e-23 | 430 | 528 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +++n+YA+++GFs+++ +s ++ krn+e+++ tf+C+k+ k++ ++k ++ er+t+++ t+Ck+ ++++++ + +w +t+l+l+ LOC_Os05g03090.1 430 NYFNFYAYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVIGTECKCVMVISER-NLEWIITRLDLD 521 59**************99998888899******************9999899999889999******************9.9*********** PP FAR1 85 HnHelap 91 HnHel+p LOC_Os05g03090.1 522 HNHELSP 528 *****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-23 | 430 | 528 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.398 | 665 | 701 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.8E-6 | 665 | 700 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-7 | 676 | 703 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 941 aa Download sequence Send to blast |
MEINEKIDDR EANLQYTQKG ITSLSDLEKE KGEEQEKSTD SGKKSQGLKI MKQLAGKIEA 60 GTSTDSVNSK SGTEEKILKI SNDLKKADEK QLQEVKTSRG FETDTDKKAQ RFKTMKQLPG 120 IFEDGTCTAL VQSNSGLAFL EKNYNTTQSY KMQENRDNIK SGNKGHLSDI GSKIEKKNTT 180 NQTCLALLEE NYNTTLSYRV QENMDITKTG KGKIMKQIAG NSKDFSETEA KLDKTKNSEA 240 DIGCSALNES EKSIIENNDK GTISCMNMQE INSENGANNA KVDYENNVLS LLDQDYIADS 300 FISYTSLMEH IISSQPKRCN ELKDKSLEQT SEIGYSNVDN QSQHAWSLDI FNLQESVQEP 360 ILEQSSDIGN ISGNGVDDDV MNDELLTEED IEQFLEEEQQ EALKGNNAII DRKYIPELDQ 420 KFKSIIEAHN YFNFYAYMAG FSIVNVHSAR TTSKKRNREV IRVTFKCYKY VKADCNTKPE 480 TVDETATGER KTNEVIGTEC KCVMVISERN LEWIITRLDL DHNHELSPPN KVRFLRSHKY 540 LSTEERVLIR TLKECHIPTR NMIVILSVLR GGLTSLPYTK KDISNVRTEI NRETSSNDMM 600 QCLTYLKKKQ EKDPNFFYEF DLDENRKAQL RKTLELQVEE IKKFKCYAVF EAENVISKQI 660 RKRKYLVMMD LDTEEYTCIC AMFQKDGILC SHILKIMLHL SIKEIPEKYI MHRWRKNHKS 720 TEIIIGKEII PVSESSVLRF NILSRKFAEI ASKGAKTVEA YKFLMEESEK IDEKLNTMFS 780 HEFEGADKQQ GHEENNSFSP TAEVNEKSEN THIHGDIRNE EDYIEDPDIA NSKGRPKQRY 840 KTIREQIEDK ETNHCSHCGR TEHTFPTCPF KHIEFDLARK RKRKIPSKPQ KSGEEEKKEA 900 TSKKRKPNKK ENTEISKSHQ DEVQQLSKRV KKKSEINTSK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 878 | 883 | RKRKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75L92 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g03090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g03090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC093088 | 0.0 | AC093088.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1001_G01, complete sequence. | |||
GenBank | AC093089 | 0.0 | AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q75L92 | 0.0 | Q75L92_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 4e-16 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g03090.1 |