PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g03040.1 | ||||||||
Common Name | AP2D23, LOC4337654, Os05g0121600, OSNPB_050121600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 513aa MW: 55608.3 Da PI: 7.2189 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.6e-17 | 170 | 219 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g LOC_Os05g03040.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.1 | 4.5e-13 | 262 | 312 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g LOC_Os05g03040.1 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 312 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-16 | 170 | 228 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 170 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-32 | 171 | 233 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.73E-11 | 171 | 229 | No hit | No description |
PROSITE profile | PS51032 | 17.596 | 171 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-17 | 171 | 228 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 262 | 321 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.83E-24 | 262 | 322 | No hit | No description |
Pfam | PF00847 | 1.4E-8 | 262 | 312 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-32 | 263 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 263 | 320 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 263 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 264 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-6 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA IAPAEEGSSS TPPSPPPPPA 60 AVLEFSILRS SASASGENDA DDDEEEEATP SPPPHHQHQQ LLVTRELFPS AAPSPQHWAE 120 LGFLRPDPPR PHPDIRILAH APPPAPPPPP PQPQPQAAKK SRRGPRSRSS QYRGVTFYRR 180 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS 240 LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA 300 RAYDKAAIKC NGREAVTNFE PSTYDGELPT DAAAQGADVD LNLRISQPAA SQQSPKRDSG 360 SLGLQIHHGS FEGSEFKRAK NDAAPSELAS RPHRFPLLTE HPPIWTAQPH PLFPNNEDAS 420 RSSDQKRKPS EGVAVPSWAW KQVSHHHPAP PHTLPLPFFS SSSSSPSSSS AAASSGFSKA 480 ATTAAAAQHT ATLRFDPTAP SSSSSSRHHH HH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.61645 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2TQ34 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates progressively in panicles. Present at low levels in developing seeds, with a progressive decrease during development (PubMed:20713616). In spikelets, fades out progressively after anthesis (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots, seedlings and leaves and, to a lower extent, in stems, panicles and developing seeds (PubMed:20713616). Present in spikelets (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g03040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269|PubMed:27181944, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g03040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685117 | 0.0 | AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639329.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | Q2TQ34 | 0.0 | AP21_ORYSJ; APETALA2-like protein 1 | ||||
TrEMBL | A0A0E0PGU7 | 0.0 | A0A0E0PGU7_ORYRU; Uncharacterized protein | ||||
STRING | OS05T0121600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-97 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g03040.1 |
Entrez Gene | 4337654 |