PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g02390.1
Common NameLOC4337609, OJ1654_B10.5, Os05g0114400, OsJ_16882, OSJNBb0041A22.16, OSNPB_050114400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 199aa    MW: 21213.1 Da    PI: 6.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g02390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000535173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+++F++   L  H  +H
  LOC_Os05g02390.1 51 FVCKTCNRVFPSFQALGGHRASH 73
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-849114No hitNo description
PfamPF139121.0E-125075IPR007087Zinc finger, C2H2
SMARTSM003550.115173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4945178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003554.892114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.64292122IPR007087Zinc finger, C2H2
PfamPF139122.0E-892116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKRFAFEDSD MARVLMLMSS HGQQEQALAL PVPVQLPLAA ARGDRAPERA FVCKTCNRVF  60
PSFQALGGHR ASHKKPRLDG DGDLSLSKPK LHGCSICGLE FAIGQALGGH MRRHRAMTGG  120
MPRAIVVDKK PDVVDVHVHG HDDDGGIKRG GLWLDLNHPP CDDAGDDDAE CGHNAAGAGI  180
TFHQFLDTGA MAVDCVGY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.559110.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329941900.0
Expression AtlasQ75L04-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g02390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g02390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939210.0AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085040.0AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1089810.0AK108981.1 Oryza sativa Japonica Group cDNA clone:002-153-F01, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638278.11e-143zinc finger protein ZAT12
TrEMBLA0A0D3G2I61e-142A0A0D3G2I6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZTE71e-142A0A0D9ZTE7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H8M31e-142A0A0E0H8M3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PGN61e-142A0A0E0PGN6_ORYRU; Uncharacterized protein
TrEMBLA2XZN51e-142A2XZN5_ORYSI; Uncharacterized protein
TrEMBLI1PRW01e-142I1PRW0_ORYGL; Uncharacterized protein
TrEMBLQ75L041e-142Q75L04_ORYSJ; Os05g0114400 protein
STRINGOGLUM05G01060.11e-142(Oryza glumipatula)
STRINGORUFI05G01070.11e-142(Oryza rufipogon)
STRINGOS05T0114400-011e-142(Oryza sativa)
STRINGONIVA05G01090.11e-142(Oryza nivara)
STRINGORGLA05G0010800.11e-142(Oryza glaberrima)
STRINGOBART05G01050.11e-142(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-25C2H2 family protein