PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g01550.1
Common NameLOC4337562, Os05g0106000, OsJ_16816, OSJNBb0035J08.11, OSNPB_050106000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 402aa    MW: 44610.6 Da    PI: 8.3353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g01550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001389111323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+  +Cgk+F +   L++H  +H
  LOC_Os05g01550.1  89 CSyeNCGKTFVDVAALRKHAHVH 111
                       77779**************9887 PP
2zf-C2H218.55.3e-06116140123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       y C+   Cgk F ++s LkrH   H
  LOC_Os05g01550.1 116 YICQepGCGKKFVDSSKLKRHHLIH 140
                       889999***************9988 PP
3zf-C2H218.94.2e-06146170123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp   Cgk Fs   nL++H++tH
  LOC_Os05g01550.1 146 FICPhpGCGKAFSLDFNLRSHLKTH 170
                       789*********************9 PP
4zf-C2H216.52.3e-05176200123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk+F++ s Lk+H + H
  LOC_Os05g01550.1 176 HVCPfpACGKRFTSDSKLKSHVKGH 200
                       789999***************9988 PP
5zf-C2H218.36.2e-06261286123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       y+Cp   Cgk + +++ L+ H++t H
  LOC_Os05g01550.1 261 YVCPydGCGKAYIHSYKLNLHLKTqH 286
                       9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-1282111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40687116IPR007087Zinc finger, C2H2
SMARTSM003550.01687111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-790140No hitNo description
Gene3DG3DSA:3.30.160.606.8E-13113136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012116140IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066116145IPR007087Zinc finger, C2H2
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-12127180No hitNo description
Gene3DG3DSA:3.30.160.603.2E-18137171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.822146175IPR007087Zinc finger, C2H2
SMARTSM003550.0011146170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8174200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012176200IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367176205IPR007087Zinc finger, C2H2
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-7179200No hitNo description
SuperFamilySSF576671.82E-7256284No hitNo description
Gene3DG3DSA:3.30.160.604.5E-10257286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0021261286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619261294IPR007087Zinc finger, C2H2
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEYAAPAGAG AGGYYYYPPS QQHKPRRPPR PAARWVKHWI PQDLATSSGK CALYKWVRED  60
VYKNLKDGKA VPEPEAVKPE PTTEILFLCS YENCGKTFVD VAALRKHAHV HNERQYICQE  120
PGCGKKFVDS SKLKRHHLIH TGQKDFICPH PGCGKAFSLD FNLRSHLKTH ALENYHVCPF  180
PACGKRFTSD SKLKSHVKGH EKTGTPITAQ YVPSSDKPQS SSKPATPATT KPTTPAATKT  240
TTPASTKPTT PAPTSFAERP YVCPYDGCGK AYIHSYKLNL HLKTQHPEHG QEENGRIAAH  300
ASEHAVNDRA NQYNYAEIVD LAPNPKRSKT NSGHKTPSSN KAYNVKISSV LPADISGVKN  360
QWPGKYEDDS EETEEDQGNN IEDGWRYGNQ NADDEETEYE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34892028119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.153750.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886530.0
Expression AtlasQ65XI2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g01550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g01550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637702.10.0zinc finger transcription factor YY1
TrEMBLA0A0E0PGF40.0A0A0E0PGF4_ORYRU; Uncharacterized protein
TrEMBLQ65XI20.0Q65XI2_ORYSJ; Os05g0106000 protein
STRINGORUFI05G00440.10.0(Oryza rufipogon)
STRINGOS05T0106000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-91C2H2 family protein