PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g59380.1
Common NameOs04g0690100, OSNPB_040690100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 478aa    MW: 51876.9 Da    PI: 9.079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g59380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-06248270223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +CpdCg+ F r+++L+ H++  H
  LOC_Os04g59380.1 248 SCPDCGEIFVRPDSLHLHQSIrH 270
                       8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280247270IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871247275IPR007087Zinc finger, C2H2
SuperFamilySSF563995.85E-21272476No hitNo description
Gene3DG3DSA:3.90.228.108.4E-13274476IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKKLVVA SRKVDEKDKK QVDYKCSRSS  60
GRDECCKVES RHQQCTEPES PSYRLALRSL FSCRNSSSSS HAGHHHHRAA DGKKLGCNSA  120
SICKVKQDNP MQQHMRRAED ELKVKDKPPV AEPYCKRRAS VSACNISSER SVKKSVKQQQ  180
QEASSSLQSS ASISASSCSS TAGGGGSFRG MQQLSLRRLS GCYECHMVVD PISGVFRDSS  240
SMRATICSCP DCGEIFVRPD SLHLHQSIRH AVSELGAEDT SRNIISIIFQ SSWLKKQSPV  300
CAIDRILKVH NAARTLARFD DYRAAVKAKA MAHRHPRCTA DGNELLRFHC ATLSCDLGLH  360
GATHLCDHLS CAACAIIRHG FRPPAPGAGI RTMATSGRAH DAVVSSGSEG DRRAMLVCRV  420
IAGRVRREEA AAAAAEEEEE EYDSVAGTTP GLYSNLDELD VFNPTAILPC FVVVYRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KKKKKKKKK
22935KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.808570.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329850650.0
Expression AtlasQ0J8S4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g59380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g59380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0998560.0AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.10.0uncharacterized protein LOC4337494
TrEMBLQ0J8S40.0Q0J8S4_ORYSJ; Os04g0690100 protein (Fragment)
STRINGOS04T0690100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-87C2H2-like zinc finger protein