PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g58020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 448aa MW: 46300.2 Da PI: 8.6085 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39 | 1.9e-12 | 274 | 318 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky LOC_Os04g58020.1 274 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 318 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.851 | 157 | 215 | IPR017884 | SANT domain |
SMART | SM00717 | 2.6E-5 | 158 | 213 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-9 | 161 | 217 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-5 | 162 | 211 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 267 | 323 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-16 | 269 | 324 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-11 | 271 | 321 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.9E-17 | 271 | 321 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 8.05E-10 | 274 | 319 | No hit | No description |
Pfam | PF00249 | 5.9E-11 | 274 | 318 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 274 | 317 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MSASASAVCL LPPRGGSLAR PDTALPPASQ PATVAVNQNI PRLASPRLAV TSITLLPRRG 60 RRCAVDLLLL HLHRLLLFLS LFSEETPNLF LPRKPAAFLK RIKSPSLIRR CNPSPQNLAA 120 PRAVLGFELM AVEEASSSSG GGRGGGGGGG GEEGLSGCGG GWTREQEKAF ENALATVGDD 180 EEEGDGLWEK LAEAVEGKTA DEVRRHYELL VEDVDGIEAG RVPLLVYAGD GGVEEGSAGG 240 GKKGGGGGGG GGGGGHGEKG SAKSSEQERR KGIAWTEDEH RLFLLGLEKY GKGDWRSISR 300 NFVISRTPTQ VASHAQKYFI RLNSMNRERR RSSIHDITSV NNGDTSAAQG PITGQPNGPS 360 ANPGKSSKQS LQPANAPPGV DAYGTTIGQP VGGPLVSAVG TPVTLPVPAA PHIAYGMHAP 420 VPGAVVPGAP VNMPPMPYPM PPPTSHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-13 | 157 | 232 | 6 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 247 | GGKKGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100773 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991375 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g58020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g58020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636999.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 2e-99 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A482ESP0 | 0.0 | A0A482ESP0_ORYSJ; MYB protein | ||||
STRING | ORUFI04G31270.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 5e-78 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g58020.1 |
Publications ? help Back to Top | |||
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