PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g57340.1 | ||||||||
Common Name | LOC4337341, Os04g0669200, OSJNBa0043A12.18, OSNPB_040669200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 19890.5 Da PI: 9.3677 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 13 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + r+r++lg++++ae Aa+a++ a+++l+g LOC_Os04g57340.1 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 63 68********.**********843...6*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-14 | 13 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.26E-20 | 13 | 71 | No hit | No description |
SuperFamily | SSF54171 | 6.21E-22 | 14 | 72 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.039 | 14 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-31 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 14 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MVGGEVMCEA AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTYDSAEAA ARAYDVAARN 60 LRGPLARTNF PLVSSLPLPS PHYHLPGKAA AAAPPVAGPA CSASSTVESS SGPRGPRPAA 120 TAAAVPRRRV PRPAPPAPDA GCHSDCASSA SVVDDADDAS TVRSRVAAFD LNLPPPLDRD 180 HVDLCTDLRL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 10 | 72 | 1 | 64 | ATERF1 |
3gcc_A | 1e-20 | 10 | 72 | 1 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.19362 | 0.0 | callus| flower| leaf| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q7XR67 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g57340.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g57340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606619 | 0.0 | AL606619.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence. | |||
GenBank | AL732340 | 0.0 | AL732340.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence. | |||
GenBank | AL732346 | 0.0 | AL732346.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634065.1 | 1e-129 | ethylene-responsive transcription factor 7 | ||||
Swissprot | O80339 | 4e-32 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0H774 | 1e-128 | A0A0E0H774_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PFF6 | 1e-128 | A0A0E0PFF6_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q259P7 | 1e-128 | Q259P7_ORYSA; B0811B10.20 protein | ||||
TrEMBL | Q7XR67 | 1e-128 | Q7XR67_ORYSJ; OSJNBa0043A12.18 protein | ||||
STRING | ORUFI04G30650.1 | 1e-129 | (Oryza rufipogon) | ||||
STRING | OS04T0669200-01 | 1e-129 | (Oryza sativa) | ||||
STRING | ONIVA04G27460.1 | 1e-129 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-21 | ethylene response factor 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g57340.1 |
Entrez Gene | 4337341 |
Publications ? help Back to Top | |||
---|---|---|---|
|