PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g57010.2 | ||||||||
Common Name | LOC4337319, Os04g0665700, OsJ_16534, OSJNBa0087O24.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 221aa MW: 22639.4 Da PI: 9.3136 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 16 | 41 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ LOC_Os04g57010.2 16 KTRMCTKYNTAEGCKFGDKCHFAHGE 41 9***********************96 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 187 | 212 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ LOC_Os04g57010.2 187 YKTKLCENFVK-GTCTFGDRCHFAHGE 212 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.046 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-13 | 15 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-8 | 15 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-5 | 16 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.37E-14 | 81 | 156 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.4E-15 | 85 | 155 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.7E-11 | 85 | 155 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.529 | 86 | 150 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.70E-14 | 88 | 150 | No hit | No description |
Pfam | PF00013 | 8.6E-11 | 88 | 150 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-15 | 185 | 216 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-9 | 185 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.488 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-10 | 187 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDHAAGGNSH PASSGKTRMC TKYNTAEGCK FGDKCHFAHG ERELGKPAYM SHESAMAPPM 60 GGRYGGRPEP PPPAAMGPPA GNFGASATAK ISVDASLAGG IIGKGGVNTK QICRVTGVKL 120 SIRDHESDSN LKNIELEGNF DQIKQASNMV GELIATISPS TPAKKPAGSA AGAAPAGRGG 180 PGGRSNYKTK LCENFVKGTC TFGDRCHFAH GENEQRKGAA * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.5810 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37991574 | 0.0 | ||||
Expression Atlas | Q7XPK1 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g57010.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g57010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606646 | 0.0 | AL606646.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855038 | 0.0 | CR855038.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence. | |||
GenBank | CT833835 | 0.0 | CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636567.1 | 1e-159 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-160 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | B8AVZ7 | 1e-158 | B8AVZ7_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01MN3 | 1e-158 | Q01MN3_ORYSA; H1005F08.11 protein | ||||
STRING | OS04T0665700-01 | 1e-159 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-52 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g57010.2 |
Entrez Gene | 4337319 |
Publications ? help Back to Top | |||
---|---|---|---|
|