PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g57010.1 | ||||||||
Common Name | LOC4337319, Os04g0665700, OsJ_16534, OSJNBa0087O24.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 310aa MW: 31787.8 Da PI: 9.8875 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.4 | 2.5e-08 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ LOC_Os04g57010.1 105 KTRMCTKYNTAEGCKFGDKCHFAHGE 130 9***********************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 276 | 301 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +GdrC+FaHg+ LOC_Os04g57010.1 276 YKTKLCENFVK-GTCTFGDRCHFAHGE 301 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.23 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-6 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.49 | 45 | 62 | No hit | No description |
PROSITE profile | PS50103 | 13.892 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.046 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-8 | 104 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-13 | 104 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-5 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.73E-14 | 170 | 245 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.7E-11 | 174 | 244 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.7E-15 | 174 | 244 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.529 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.6E-10 | 177 | 239 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.14E-14 | 177 | 239 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-15 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-9 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.488 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-10 | 276 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEGAGAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKL KPCTKFFSTI GCPFGEGCHF 60 SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF 120 GDKCHFAHGE RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI 180 SVDASLAGGI IGKGGVNTKQ ICRVTGVKLS IRDHESDSNL KNIELEGNFD QIKQASNMVG 240 ELIATISPST PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG 300 ENEQRKGAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5810 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991574 | 0.0 | ||||
Expression Atlas | Q7XPK1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g57010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g57010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833835 | 0.0 | CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636567.1 | 0.0 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 0.0 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | B8AVZ7 | 0.0 | B8AVZ7_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01MN3 | 0.0 | Q01MN3_ORYSA; H1005F08.11 protein | ||||
STRING | OS04T0665700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g57010.1 |
Entrez Gene | 4337319 |
Publications ? help Back to Top | |||
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