PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g56990.1 | ||||||||
Common Name | LOC4337318, Os04g0665600, OSNPB_040665600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 425aa MW: 46308.2 Da PI: 7.0698 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 241 | 295 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+ LOC_Os04g56990.1 241 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 295 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.662 | 238 | 298 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.78E-18 | 239 | 295 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-30 | 240 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-24 | 241 | 296 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-9 | 245 | 294 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-22 | 326 | 372 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MLQDIMNTKK IKLHDCHFGS PLCDPSPAPH LLSSAAAAGL SFHPGLVSSA AQHQQHGAGG 60 WLHEEYYAPR SSPPSSLLAQ TCVGSNATAF YAAENLPQFD FPALGTAAAA AAKAPFRSSE 120 SELYRPVDPL LLRADHSVRT YYVRPQKRDS GERTPLPPPS QQQHQDRIHG LFAGAPTTRL 180 LSGEPKIHSF PPQVAAKPIL PAMDAPSLQN QMENQLTRNC IGAATPVTPT GNLAGSGAPS 240 KTRIRWTQDL HERFVDCVNQ LGGADKATPK GILKLMNSDG LTIYHIKSHL QKYRIAKYMP 300 ASSEGKQLEK RATGNDMQNL DPKTGMQITE ALRVQLDVQR RLHEQLEIQR NLQLRIEEQG 360 KRLQKMFEDQ LKASRSVMEP QELDDVVAFA AGDGDDDAFD DVDVQLLAVA GSGYDDAGFQ 420 SKIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-23 | 241 | 298 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-23 | 241 | 298 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-23 | 241 | 298 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-23 | 241 | 298 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-23 | 241 | 298 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.7512 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q0J995 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g56990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g56990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101951 | 0.0 | AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636269.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636270.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636271.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_015636272.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
Refseq | XP_025880593.1 | 0.0 | uncharacterized protein LOC4337318 isoform X1 | ||||
TrEMBL | A0A0D3G1C3 | 0.0 | A0A0D3G1C3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZS27 | 0.0 | A0A0D9ZS27_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PFB7 | 0.0 | A0A0E0PFB7_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PQM7 | 0.0 | I1PQM7_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0J995 | 0.0 | Q0J995_ORYSJ; Os04g0665600 protein | ||||
STRING | OS04T0665600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA04G0249600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6933 | 37 | 51 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 6e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g56990.1 |
Entrez Gene | 4337318 |