PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g56850.1 | ||||||||
Common Name | ARF11, ARF5, MP, Os04g0664400, OSJNBa0084K01.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 956aa MW: 105224 Da PI: 6.3206 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.2e-23 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F ++ LOC_Os04g56850.1 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RD 232 89*********************999*****9555555.49************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++v+r+ LOC_Os04g56850.1 233 EKSQLLLGVRRA 244 677789999997 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 269 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s F+++YnPr+s+s Fv++v++++ka++++ svGmRf m+fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+ LOC_Os04g56850.1 269 AAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQ 351 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-45 | 133 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-40 | 136 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-20 | 142 | 243 | No hit | No description |
Pfam | PF02362 | 1.1E-20 | 143 | 244 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 143 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-22 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-34 | 269 | 351 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-10 | 806 | 939 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.19E-9 | 849 | 931 | No hit | No description |
PROSITE profile | PS51745 | 25.501 | 852 | 936 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 956 aa Download sequence Send to blast |
MASSQEKAKT GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY 60 FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEVY AQMTLQPVNS 120 ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN 180 QELIVRDLHD NMWTFRHIYR GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG 240 VRRATRQQTM LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVIPVARYN 300 KATYMQPSVG MRFAMMFETE ESSKRRYTGT VVGISDYDPM RWPNSKWRNL QVEWDEHGYG 360 ERPERVSIWD IETPENTLVF PSSTLNSKRQ CLPGYGVSVP GMEIGSANMS SFPRAQGNPY 420 GSLQHIPAVG SELAIMLLNQ SGQTLGSPLS FHQSSYSSII QNVKQNYIPP LTVSTSACLT 480 KQESLPSDDA QHQFHMANMQ NGDLEGSEVQ PVIDSISESK LNATSRDPRN TDSYTSRSTS 540 EQNSKGEPRG KTRRSKKGLP HKTVSEKSDL SSAPSWICDN QQVGLESKLV GCDEQVNCGN 600 IEDSSGALTQ GNFVGQPHGH QVEQKGVLSP PKVESSKSPD GGKSVNSFPN QGCFSQFIDG 660 LDWMTQPSYY QDSNVIQPAG VSENIFSSSA DIPPSMIADT METFQASCLS DCLPNSIQEF 720 ISSPDLNSLT FLSPDMQNLE VQLQHDGSNL PSTSNSFVQM SFSEESASQS ANLSGLHMES 780 THRSINTTSC SQPMSTGGFD AGMYSKLPRL KESQILSLPE IHTNSMGTSA CSMDATEYSL 840 DRSAKPMKPP VRTYTKVQKQ GSVGRSIDVT GFRNYHELRS AIACMFGLQG KLEHPGSSEW 900 KLVYVDYEND VLLVGDDPWE EFINCVRCIR ILSPSEVQQM SENGMHVLND CIQAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 374 | 5 | 390 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48513 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988661 | 0.0 | ||||
Expression Atlas | Q8S983 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g56850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g56850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071292 | 0.0 | AB071292.1 Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881052.1 | 0.0 | auxin response factor 11-like isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | I1PQL7 | 0.0 | I1PQL7_ORYGL; Auxin response factor | ||||
STRING | ORGLA04G0248600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 | Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g56850.1 |
Publications ? help Back to Top | |||
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