PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g56780.1
Common NameLOC107275471, Os04g0663600, OSNPB_040663600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WOX
Protein Properties Length: 290aa    MW: 30954.5 Da    PI: 7.8725
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g56780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-193494357
                      --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+t+t+eq+++L el+++   r p+ e+++++A+ l    +++ ++V++WFqN++a+e++
  LOC_Os04g56780.1 34 TRWTPTTEQIKILRELYYScgIRSPNSEQIQRIAAMLrqygRIEGKNVFYWFQNHKARERQ 94
                      7*****************7668*************************************97 PP
2Wus_type_Homeobox114.64.9e-373396365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRWtPt+eQikiL+ely+ +G+r+Pn+e+iqri+a+L++yG+ie+kNVfyWFQN+kaRerqk+
   LOC_Os04g56780.1 33 GTRWTPTTEQIKILRELYYsCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKK 96
                       69***************9978*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-122798IPR009057Homeodomain-like
PROSITE profilePS5007110.3982995IPR001356Homeobox domain
SMARTSM003897.3E-63199IPR001356Homeobox domain
CDDcd000863.98E-73496No hitNo description
PfamPF000461.2E-163494IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-73594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDHMQQQQRQ QVGGGGGEEV AGRGGVPVCR PSGTRWTPTT EQIKILRELY YSCGIRSPNS  60
EQIQRIAAML RQYGRIEGKN VFYWFQNHKA RERQKKRLTT LDVTTTTAAA ADADASHLAV  120
LSLSPTAAGA TAPSFPGFYV GNGGAVQTDQ ANVVNWDCTA MAAEKTFLQD YMGVSGVGCA  180
AGAAPTPWAM TTTTREPETL PLFPVVFVGG DGAHRHAVHG GFPSNFQRWG SAAATSNTIT  240
VQQHLQQHNF YSSSSSQLHS QDGPAAGTSL ELTLSSYYCS CSPYPAGSM*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0N7KJV6
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaf primordia. Expressed in branch an floral meristems. Transiently expressed in the shoot apex. {ECO:0000269|PubMed:16284419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Function -- GeneRIF ? help Back to Top
  1. Homeobox is pivotal for WUS controlling tiller development and female fertility in rice.
    [PMID: 27194802]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g56780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g56780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347460.0AM234746.1 Oryza sativa mRNA for WUS protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635371.10.0WUSCHEL-related homeobox 1B
SwissprotQ7XM130.0WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A0D9ZS111e-163A0A0D9ZS11_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PF991e-163A0A0E0PF99_ORYRU; Uncharacterized protein
STRINGOS04T0663600-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-34WOX family protein
Publications ? help Back to Top
  1. Nagasaki H,Matsuoka M,Sato Y
    Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice.
    Genes Genet. Syst., 2005. 80(4): p. 261-7
    [PMID:16284419]
  2. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  3. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  4. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]