PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g56150.1
Common NameLOC107278681, OsJ_16460, OSJNBa0071I13.10, OSJNBb0022F16.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 140aa    MW: 14868.6 Da    PI: 5.1887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g56150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-21252155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ++ykGVr+++ +g+WvAeIr+p        +r++lg++gtae+Aa+a+++a++ + g
  LOC_Os04g56150.1  2 TKYKGVRQRH-WGSWVAEIRHP-----LlkTRIWLGTYGTAEDAARAYDEAARLMSG 52
                      69*******9.**********8.....334**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-31262No hitNo description
PfamPF008474.4E-14250IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-21362IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-33361IPR001471AP2/ERF domain
PROSITE profilePS5103220.982360IPR001471AP2/ERF domain
SMARTSM003802.8E-38366IPR001471AP2/ERF domain
PRINTSPR003673.9E-10415IPR001471AP2/ERF domain
PRINTSPR003673.9E-102642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTKYKGVRQR HWGSWVAEIR HPLLKTRIWL GTYGTAEDAA RAYDEAARLM SGPAARTNFP  60
LSSSGGNARS CLSPTLRARL EKCCGAGSSA QAQQGAVAGQ DNDDAAAAAA AMGVDDGDEY  120
VEEMIQELTF YGSIEIVQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16466669ATERF1
3gcc_A3e-16466669ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154492262e-48
Expression AtlasQ7X7U2-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g56150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g56150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064460.0AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence.
GenBankAL6066850.0AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551360.0CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635341.11e-100ethylene-responsive transcription factor ERF003
SwissprotQ94AW59e-40ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0PF272e-98A0A0E0PF27_ORYRU; Uncharacterized protein
TrEMBLA2XYF42e-98A2XYF4_ORYSI; Uncharacterized protein
TrEMBLQ7X7U22e-98Q7X7U2_ORYSJ; OSJNBa0071I13.10 protein
STRINGORUFI04G29600.14e-99(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-26ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]