PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g54880.1
Common NameOSJNBa0063C18.5, OSJNBb0079B02.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 734aa    MW: 83917.8 Da    PI: 9.056
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g54880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.81.5e-17138218190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk          + r+gC a++k++++   + w vtk+++ HnH++ 
  LOC_Os04g54880.1 138 NFYNVYAVSKGFGIRLDKDRMN-TKKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINMSGaGSGWSVTKVVSAHNHPMK 218
                       6****************99998.5555999*********99887655.........9**************99999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-13138218IPR004330FAR1 DNA binding domain
PfamPF105511.4E-18244310IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MDKQVKNHRP SDGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS  60
RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGAGIPMER MVVDNVDSSA VIPPEYADPQ  120
ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT KKQRTMRQIC CSHQGRNPKT  180
KKPSVRIGCP AMMKINMSGA GSGWSVTKVV SAHNHPMKKS VGVTKNYQSH NQIDEGTRGI  240
IEEMSTFFGC ALLREETEES FTWLFNTFKE CMNGKVPIGI LTDNCPSMAA AIRTVFPNTI  300
HRVCKWHVLK KAKEFMGNIY SKRHTFKKVF HKVLTQTLTE EEFVAAWHKL IRDYNLEKSV  360
NLRHIWDIRR KWAFVYFSHR FFAGMTTTQR SESANHVFKM FVSPSSSMNG FVKRYDRFFN  420
EKLQKEDSEE FQTSNDKVEI KTRSPIEIHA SQVYTRAVFQ LFSEELTDSL SYMVKPGEDE  480
STVQVVRMNS QESFLRKEYQ VLVQYGLSRI PERYILKRWT KDARDTIPPH LHGYKDDVNA  540
SQSRSYRHVM LNRKTVEVAK IANKDVQTFK MAMTVMNKLL EDMKNQLSLD DGDNSREAPK  600
RAARHKSRST VLTEDGNEDV GGGDEDSEYD VPSEDEGGNL TADILPPLKK RSRGRPKVNR  660
YKSGGEVASL KRRKEVGIEK KNTTNECESV EKENQVIDHE DEVPFPRRFC HTCHEAGHNS  720
RTCGRTSTYK RKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.911210.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976025290.0
Expression AtlasQ7X753-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g54880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g54880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064550.0AL606455.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence.
GenBankAL7316070.0AL731607.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881293.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ7X7530.0Q7X753_ORYSJ; OSJNBa0063C18.5 protein
STRINGOS04T0354200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-57FAR1-related sequence 5