PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g54474.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 371aa MW: 41971.5 Da PI: 6.0974 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38 | 3.7e-12 | 76 | 116 | 2 | 42 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k+ rr+++NReAAr+sR+RKka+i++Le+ +L + LOC_Os04g54474.3 76 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLE 116 5799***************************8544443333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-11 | 75 | 139 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.8E-9 | 77 | 117 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.933 | 77 | 121 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.29E-7 | 79 | 125 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-8 | 81 | 129 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 82 | 97 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.6E-26 | 167 | 243 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MTSASTQFAA PVRMGAYDRP PPVGMWSHEQ FKVDNGQATS ASTIMEAEMK FENRLEEIPQ 60 VVLEEGRNVD QEASKPPDKV LRRLAQNREA ARKSRLRKKA YIQQLETSRL KLAQLEQELQ 120 RARQQAVYAN GSLREPNLGF TGPIDPGALG FEIKYSHWVD EQNRNTGELR NALLQGQTTD 180 QDLELKLLVE AGLDNYNRLF EMKEEAANSD VFYIMSGMWK TPTERFFLWI GGFRPSEVLK 240 NLRPQLEPLT DKQVVEVGGL QQTSMQVEDA LSQGMDKLKQ TIADSLTAAD PFDSPEAYMV 300 HMANAVEQLR SLVQFVTQAD HLRQQTLQEM HRILTTRQAA RGLLALGDYF QRFRALSSLW 360 AARPRDSGIS * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.27178 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32976924 | 0.0 | ||||
Expression Atlas | B7EMK6 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g54474.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g54474 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK073715 | 0.0 | AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880678.1 | 0.0 | transcription factor TGAL6 isoform X3 | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | A0A0D3G049 | 0.0 | A0A0D3G049_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZRD8 | 0.0 | A0A0D9ZRD8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PEM4 | 0.0 | A0A0E0PEM4_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PPQ2 | 0.0 | I1PPQ2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0217100.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-122 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g54474.3 |