PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g54474.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 371aa    MW: 41971.5 Da    PI: 6.0974
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g54474.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.7e-1276116242
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                       +++k+ rr+++NReAAr+sR+RKka+i++Le+   +L +  
  LOC_Os04g54474.2  76 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLE 116
                       5799***************************8544443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1175139IPR004827Basic-leucine zipper domain
PfamPF001707.8E-977117IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.93377121IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.29E-779125No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-881129No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141443.6E-26167243IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTSASTQFAA PVRMGAYDRP PPVGMWSHEQ FKVDNGQATS ASTIMEAEMK FENRLEEIPQ  60
VVLEEGRNVD QEASKPPDKV LRRLAQNREA ARKSRLRKKA YIQQLETSRL KLAQLEQELQ  120
RARQQAVYAN GSLREPNLGF TGPIDPGALG FEIKYSHWVD EQNRNTGELR NALLQGQTTD  180
QDLELKLLVE AGLDNYNRLF EMKEEAANSD VFYIMSGMWK TPTERFFLWI GGFRPSEVLK  240
NLRPQLEPLT DKQVVEVGGL QQTSMQVEDA LSQGMDKLKQ TIADSLTAAD PFDSPEAYMV  300
HMANAVEQLR SLVQFVTQAD HLRQQTLQEM HRILTTRQAA RGLLALGDYF QRFRALSSLW  360
AARPRDSGIS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.271780.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329769240.0
Expression AtlasB7EMK6-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g54474.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g54474
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737150.0AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880678.10.0transcription factor TGAL6 isoform X3
SwissprotA0A0P0WFC80.0TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0D3G0490.0A0A0D3G049_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZRD80.0A0A0D9ZRD8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PEM40.0A0A0E0PEM4_ORYRU; Uncharacterized protein
TrEMBLI1PPQ20.0I1PPQ2_ORYGL; Uncharacterized protein
STRINGORGLA04G0217100.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-122TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]