PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g54474.1 | ||||||||
Common Name | LOC9270267, Os04g0637000, OSNPB_040637000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 398aa MW: 45092 Da PI: 5.7383 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.8 | 4.1e-12 | 103 | 143 | 2 | 42 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +++k+ rr+++NReAAr+sR+RKka+i++Le+ +L + LOC_Os04g54474.1 103 PPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLE 143 5799***************************8544443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-11 | 102 | 166 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.6E-9 | 104 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.933 | 104 | 148 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 7.30E-21 | 106 | 155 | No hit | No description |
SuperFamily | SSF57959 | 5.47E-7 | 106 | 152 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-8 | 108 | 156 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 109 | 124 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.0E-26 | 194 | 270 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MELYPGYLED HFNIHKLSIS SASPPEYMTS ASTQFAAPVR MGAYDRPPPV GMWSHEQFKV 60 DNGQATSAST IMEAEMKFEN RLEEIPQVVL EEGRNVDQEA SKPPDKVLRR LAQNREAARK 120 SRLRKKAYIQ QLETSRLKLA QLEQELQRAR QQAVYANGSL REPNLGFTGP IDPGALGFEI 180 KYSHWVDEQN RNTGELRNAL LQGQTTDQDL ELKLLVEAGL DNYNRLFEMK EEAANSDVFY 240 IMSGMWKTPT ERFFLWIGGF RPSEVLKNLR PQLEPLTDKQ VVEVGGLQQT SMQVEDALSQ 300 GMDKLKQTIA DSLTAADPFD SPEAYMVHMA NAVEQLRSLV QFVTQADHLR QQTLQEMHRI 360 LTTRQAARGL LALGDYFQRF RALSSLWAAR PRDSGIS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27178 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976924 | 0.0 | ||||
Expression Atlas | A0A0P0WFC8 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g54474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g54474 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073715 | 0.0 | AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636710.1 | 0.0 | transcription factor TGAL6 isoform X1 | ||||
Refseq | XP_015636711.1 | 0.0 | transcription factor TGAL6 isoform X1 | ||||
Refseq | XP_015636712.1 | 0.0 | transcription factor TGAL6 isoform X1 | ||||
Refseq | XP_015636713.1 | 0.0 | transcription factor TGAL6 isoform X2 | ||||
Refseq | XP_015636714.1 | 0.0 | transcription factor TGAL6 isoform X2 | ||||
Refseq | XP_015636715.1 | 0.0 | transcription factor TGAL6 isoform X2 | ||||
Refseq | XP_025880677.1 | 0.0 | transcription factor TGAL6 isoform X1 | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | A0A0D3G046 | 0.0 | A0A0D3G046_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZRD4 | 0.0 | A0A0D9ZRD4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GKM9 | 0.0 | A0A0E0GKM9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PEM0 | 0.0 | A0A0E0PEM0_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G26680.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS04T0637000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA03G13630.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART04G25140.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3571 | 38 | 77 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-122 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g54474.1 |
Entrez Gene | 9270267 |