PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g53990.1
Common NameLOC4337107, Os04g0631600, OsJ_16289, OSJNBb0015D13.17, OSNPB_040631600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 438aa    MW: 45811.3 Da    PI: 7.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g53990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053293661254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +++eYIk L
  LOC_Os04g53990.1 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5327370No hitNo description
Gene3DG3DSA:4.10.280.104.1E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGY TAWSSALAAG  60
YDGMVADNGG KQAKSTTTAS SESPGNNSSV TFQEPASIPD PAAVAAVPQP GLAGFTDWTQ  120
PFMNNGAGLH EFLQDGHHDM SASSLMNHSS NNLALQQAGH HHELLSSFGS DLLLSPTSPY  180
GGFQSSLLRS LMEPTAKQQQ QQPALAGLQQ YHQYQQQMGH APAAAAKFAQ AVGARDSLQF  240
TNDAPFWNPS AGFGMPAAVA VAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD  300
SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGE ISLKGRGLCL VPISSTFAVA  420
SEVPVELWTP FGANFIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.250060.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329793900.0
Expression AtlasQ0J9U0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g53990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g53990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693660.0AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLQ0J9U00.0Q0J9U0_ORYSJ; OSJNBb0015D13.17 protein
STRINGOS04T0631600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1484144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-48bHLH family protein