PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g53540.3 | ||||||||
Common Name | GL2-2, LOC4337074, Os04g0627000, OSJNBb0060E08.16, ROC2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 785aa MW: 85259.4 Da PI: 5.7266 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 105 | 161 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ LOC_Os04g53540.3 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161 688999************************************************995 PP | |||||||
2 | START | 203.9 | 6.6e-64 | 295 | 520 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetl 76 ela +a++elv++a+++ep+W+ + e + ++e+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d ++ +++ + LOC_Os04g53540.3 295 ELAVAAMEELVRMAQLDEPLWSVAPpldataaamETLSEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHANLVEILMDANQyaaVFSNIV 387 57899********************9**999999899999999999887779*******************************6666666666 PP SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 77 akaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +a tlev+s+g galq+m+ e+q++splvp R+++fvRy++q +g+w++vdvS+ds ++ p v +++++pSg+li++++ng+s LOC_Os04g53540.3 388 SRAITLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYS 476 6*****************************************************************98....7******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+ LOC_Os04g53540.3 477 KVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 520 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 85 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-20 | 92 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 102 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 103 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-19 | 104 | 163 | No hit | No description |
Pfam | PF00046 | 6.4E-18 | 105 | 160 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.609 | 286 | 523 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.67E-35 | 288 | 522 | No hit | No description |
CDD | cd08875 | 1.51E-119 | 290 | 519 | No hit | No description |
SMART | SM00234 | 1.0E-58 | 295 | 520 | IPR002913 | START domain |
Pfam | PF01852 | 5.8E-54 | 296 | 520 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.3E-6 | 361 | 516 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.4E-23 | 541 | 774 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MMIPARHMPS MIGRNGAAYG SSSALSLSQP NLLDNHQFQQ AFQHQQQQHH LLDQIPATTA 60 ESGDNMIRSR ASDPLGGDEF ESKSGSENVD GVSVDDQDPN QRPRKKRYHR HTQHQIQEME 120 AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRSDNEKLRA 180 ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV 240 PFPVLSNPMA AAASRAPLDL PVAPYGVPGD MFGGGGAGEL LRGVQSEVDK PMIVELAVAA 300 MEELVRMAQL DEPLWSVAPP LDATAAAMET LSEEEYARMF PRGLGPKQYG LRSEASRDSA 360 VVIMTHANLV EILMDANQYA AVFSNIVSRA ITLEVLSTGV AGNYNGALQV MSVEFQVPSP 420 LVPTRESYFV RYCKQNADGT WAVVDVSLDS LRPSPVLKCR RRPSGCLIQE MPNGYSKVTW 480 VEHVEVDDRS VHNIYKLLVN SGLAFGARRW VGTLDRQCER LASVMASNIP TSDIGVITSS 540 EGRKSMLKLA ERMVVSFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN 600 AATSFWLPVP PKRVFDFLRD ESSRSEWDIL SNGGIVQEMA HIANGRDQGN CVSLLRVNSS 660 NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAH 720 DGGDGDGGVG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVSGE 780 SNPQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12432 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 31339096 | 0.0 | ||||
Expression Atlas | Q0J9X2 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g53540.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g53540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101645 | 0.0 | AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636338.1 | 0.0 | homeobox-leucine zipper protein ROC2 isoform X1 | ||||
Refseq | XP_015636339.1 | 0.0 | homeobox-leucine zipper protein ROC2 isoform X1 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | B8AUT5 | 0.0 | B8AUT5_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA04G0231200.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g53540.3 |
Entrez Gene | 4337074 |
Publications ? help Back to Top | |||
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