PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g52810.1
Common NameOs04g0619000, OSJNBa0058K23.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 284aa    MW: 30939.6 Da    PI: 9.8768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g52810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.21.7e-324012553128
               NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd++++++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  LOC_Os04g52810.1  40 VGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRAIVTRrraaageavaGGEVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 125
                       4678**************************************977777777776777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.3231158IPR003441NAC domain
PfamPF023658.9E-1634125IPR003441NAC domain
SuperFamilySSF1019418.89E-3639158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVFFTCHESL AYFLHNLIIF PARARARAAG RRRREDAARV GATEWYFFSL HDRKYATGQR  60
TNRATRSGYW KATGKDRAIV TRRRAAAGEA VAGGEVVGMR KTLVFYQGRA PRGSKTEWVM  120
HEFRVDGHAV ADHPSSSTSS SSSNLLKEDW VLCRVFYKSR TATPRAVVSG EAAVSLSGEL  180
SLPPPLPPPV APAVVDGYTG GGYYEQDSSA GYHHHHHHRP PPSAALPFKD LTDFRDLLSN  240
MAQGGGGGAA AAKTEGFHLG WSEEESSGYV QQSAMASQAW NPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-283616264169NO APICAL MERISTEM PROTEIN
1ut4_B2e-283616264169NO APICAL MERISTEM PROTEIN
1ut7_A2e-283616264169NO APICAL MERISTEM PROTEIN
1ut7_B2e-283616264169NO APICAL MERISTEM PROTEIN
3swm_A2e-283616267172NAC domain-containing protein 19
3swm_B2e-283616267172NAC domain-containing protein 19
3swm_C2e-283616267172NAC domain-containing protein 19
3swm_D2e-283616267172NAC domain-containing protein 19
3swp_A2e-283616267172NAC domain-containing protein 19
3swp_B2e-283616267172NAC domain-containing protein 19
3swp_C2e-283616267172NAC domain-containing protein 19
3swp_D2e-283616267172NAC domain-containing protein 19
4dul_A2e-283616264169NAC domain-containing protein 19
4dul_B2e-283616264169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801600.0callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XTU3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g52810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g52810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876320.0AK287632.1 Oryza sativa Japonica Group cDNA, clone: J065074F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.10.0NAC domain-containing protein 21/22
TrEMBLQ7XTU30.0Q7XTU3_ORYSJ; OSJNBa0058K23.9 protein
STRINGONIVA04G24570.21e-136(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.12e-36NAC domain containing protein 1