PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g52560.1
Common NameLOC4336993, OSJNBa0008M17.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 962aa    MW: 108512 Da    PI: 8.6434
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g52560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.23.2e-24200283190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       ++Y +YA +vGFsvrk    k+ +n    +r fvCs+eg+r++++ k     r+r+etrtgC a++ +k+ ++gk++v++++++HnH+la
  LOC_Os04g52560.1 200 EYYASYAGNVGFSVRKGLWDKTVKN-VARSRVFVCSREGFRSKNEAK-----RPRPETRTGCPARIAIKLVSNGKYRVAEFVEDHNHQLA 283
                       69****************9999555.599*************98777.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-21200283IPR004330FAR1 DNA binding domain
PfamPF105513.6E-28380474IPR018289MULE transposase domain
PROSITE profilePS5096610.064647694IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-4669696IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MATASTSGDP TAAAGEPTPS SSASAQPRQP ASRISHIVRT YLDLSSNPKK RRAAPKSHPK  60
PAAAAAGQGA PDAGDGKDGG GKAAATPSSA AQPTTTRLLR ELGVRVSRYT HEERRDIVLR  120
YMQKRSGRQG VKRATAKAPS RQALAERRRR GARGQFLGKE GAKTVDKPEE DPEVPPEVIA  180
NAGGVPIVGM VFENEEKAYE YYASYAGNVG FSVRKGLWDK TVKNVARSRV FVCSREGFRS  240
KNEAKRPRPE TRTGCPARIA IKLVSNGKYR VAEFVEDHNH QLAAPFDIDM LKSERVLTKV  300
QPGNRNASNI PPGCKNYIRA KSSTHMNSED LGALMDYFRR MKSDNPSFYY AIQVDENDKA  360
TNVFWADARS IVDYHYFCDV ICFDTTHRSN DCRKPLALFL GMNHHRQTII FGSAFLYDET  420
VESFKWLLET FKSAMCGKQP KTILTDRSAA LKEALSLTWP GTIHRSCVWQ IYQNAFKSLE  480
HVFNTLEEFT HDFHHCMFDI EDDQEFDEIW NVIIKKYSLK GEEWLTKLYE DRENWALPYN  540
RQIFFGDIKG MLQVETSCVG LREFLDCEKD LSKFFMFFES SMEKRRQEEI QADYQASEGA  600
PRISLPLLWQ AAKVYTPIIF ELFRKEYELC MDCMAYSCGE FGSLSEYMIT VKNKTKDQLV  660
RFDSSDGTVA CTCKKFENAG ILCCHILKVY ELRNVKEIRP QYFLKRWRKD AKVGSTDETN  720
RFNFDSGTKS SVPERYAALC RSFYKIAAKA AENAETFALM ASQSDRLVEE VERILQSTLA  780
NKSSVGPSIK NQLTSMVQNE YLLNSSNEVE KSTGKKKTEV YRHKSAVVTN KMQKTRKDTR  840
HPDEAATGTR DGELNMTPDN RQSEARNSPN QFLPDQLMQG HYILGQSYGL GTSENLHNNL  900
NQFGQASSLP TMQQQAFPGN NQLTQGYPSD MHALQFVGAN PQMEHQNGDQ GQSSIPVWDF  960
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.533290.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329820500.0
Expression AtlasQ7XTS2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g52560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g52560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720270.0AK072027.1 Oryza sativa Japonica Group cDNA clone:J013106I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636013.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XTS20.0Q7XTS2_ORYSJ; OSJNBa0008M17.13 protein
STRINGORGLA04G0223700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1624233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-99FAR1-related sequence 5