PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g52090.1
Common NameLOC4336947, Os04g0610400, OSJNBa0085I10.10, OSNPB_040610400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 223aa    MW: 22798 Da    PI: 10.2507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g52090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-192474155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++ a++ ++g
  LOC_Os04g52090.1 24 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDSAALHFRG 74
                      689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-132474IPR001471AP2/ERF domain
CDDcd000181.70E-202481No hitNo description
Gene3DG3DSA:3.30.730.101.4E-312582IPR001471AP2/ERF domain
PROSITE profilePS5103224.3952582IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222583IPR016177DNA-binding domain
SMARTSM003804.2E-362588IPR001471AP2/ERF domain
PRINTSPR003671.5E-102637IPR001471AP2/ERF domain
PRINTSPR003671.5E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAPRNAAEAV AVAVAEGGGA GMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA  60
AARAYDSAAL HFRGPKAKTN FPVAFAHAHH HAPPPPLPKA AALAVVSPTS STVESSSRDT  120
PAAAPVAAAA KAQVPASPSL DLSLGMSAMV AAQPFLFLDP RVAVTVAVAA PVPRRPAVVS  180
VKKEVARLDE QSDTGSSSSV VDASPAVGVG LDLNLPPPIE EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202683664ATERF1
3gcc_A1e-202683664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.590320.0callus| leaf| panicle| root| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XPL6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g52090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g52090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066840.0AL606684.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633875.11e-152ethylene-responsive transcription factor 11
TrEMBLA0A0E0H5T51e-151A0A0E0H5T5_ORYNI; Uncharacterized protein
TrEMBLQ7XPL61e-151Q7XPL6_ORYSJ; OSJNBa0085I10.10 protein
STRINGOS04T0610400-001e-152(Oryza sativa)
STRINGONIVA04G24000.11e-152(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.16e-20ERF domain protein 11