PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g51560.1
Common NameLOC4336909, Os04g0605100, OsJ_16065, OSJNBb0015N08.8, OSNPB_040605100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 310aa    MW: 32281.8 Da    PI: 10.5914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g51560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31223280359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp ++++tYegeH+h+
  LOC_Os04g51560.1 223 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLVVTYEGEHRHT 280
                       9************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-19177219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-32209280IPR003657WRKY domain
PROSITE profilePS5081130.446216282IPR003657WRKY domain
SuperFamilySSF1182903.66E-26219280IPR003657WRKY domain
SMARTSM007741.1E-36221281IPR003657WRKY domain
PfamPF031061.6E-26223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAVDLMGCYA PRRADDQLAI QEAATAGLRS LEMLVSSLSS SSQAAGAHKA SPQQQPFGEI  60
ADQAVSKFRK VISILDRTGH ARFRRGPVES SAPAAPVAAA PPPPPPPPAP VAAALAPTSS  120
QPQTLTLDFT KPNLTMSAAT SVTSTSFFSS VTAGEGSVSK GRSLLSSGKP PLSGHKRKPC  180
AGGHSEATAN GGRCHCSKRR KNRVKRTIRV PAISSKIADI PPDEYSWRKY GQKPIKGSPY  240
PRGYYKCSTV RGCPARKHVE RATDDPAMLV VTYEGEHRHT PGPLPAPPAA AAVAAMPVSV  300
AVSTGNGHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22209279271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495490.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329829610.0
Expression AtlasQ7XNY3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g51560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g51560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0612660.0AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence.
GenBankAK0729380.0AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence.
GenBankCT8320680.0CT832068.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633632.10.0WRKY transcription factor WRKY51-like
SwissprotQ9SV158e-98WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0D3FZV30.0A0A0D3FZV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H5M00.0A0A0E0H5M0_ORYNI; HKT12 transporter
TrEMBLA0A0E0PDQ10.0A0A0E0PDQ1_ORYRU; HKT12 transporter
TrEMBLQ6IEL30.0Q6IEL3_ORYSI; HKT12 transporter
TrEMBLQ7XNY30.0Q7XNY3_ORYSJ; OSJNBb0015N08.8 protein
STRINGORUFI04G26070.10.0(Oryza rufipogon)
STRINGOS04T0605100-010.0(Oryza sativa)
STRINGONIVA04G23530.10.0(Oryza nivara)
STRINGOBART04G24360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP35571127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.15e-77WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]